The 2.0 version of rSNPBase

Variant report

Variant rs2066565
Chromosome Location chr13:50638402-50638403
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:50578800-50654400 Weak transcription Esophagus oesophagus
2 chr13:50586800-50654200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr13:50587000-50645600 Weak transcription Spleen Spleen
4 chr13:50588000-50645600 Weak transcription Ovary ovary
5 chr13:50589800-50645600 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr13:50590200-50653600 Weak transcription Small Intestine intestine
7 chr13:50594800-50641000 Weak transcription Lung lung
8 chr13:50594800-50643200 Weak transcription Brain Hippocampus Middle brain
9 chr13:50594800-50643600 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr13:50595000-50654200 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr13:50595200-50640000 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr13:50595800-50654400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr13:50598200-50641000 Weak transcription Brain Inferior Temporal Lobe brain
14 chr13:50598600-50640000 Weak transcription Placenta Placenta
15 chr13:50598600-50650200 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr13:50601600-50641000 Weak transcription Left Ventricle heart
17 chr13:50608600-50639800 Weak transcription NHLF lung
18 chr13:50611800-50646400 Strong transcription Fetal Thymus thymus
19 chr13:50612200-50639800 Weak transcription iPS-18 Cell Line embryonic stem cell
20 chr13:50612400-50639800 Strong transcription Dnd41 blood
21 chr13:50612400-50643000 Strong transcription Monocytes-CD14+_RO01746 blood
22 chr13:50612600-50639800 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr13:50612600-50644200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr13:50612800-50645400 Weak transcription HSMMtube muscle
25 chr13:50614000-50643800 Strong transcription Primary monocytes fromperipheralblood blood
26 chr13:50615200-50643200 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr13:50616000-50653600 Weak transcription Fetal Kidney kidney
28 chr13:50616600-50639800 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr13:50617400-50640400 Weak transcription Duodenum Mucosa Duodenum
30 chr13:50617400-50650000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr13:50617400-50654200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr13:50619400-50640200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr13:50621400-50645600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr13:50622600-50653400 Weak transcription Fetal Brain Male brain
35 chr13:50622800-50653400 Weak transcription Rectal Smooth Muscle rectum
36 chr13:50623400-50639800 Weak transcription Fetal Heart heart
37 chr13:50623400-50645600 Weak transcription Stomach Smooth Muscle stomach
38 chr13:50624400-50654200 Weak transcription Pancreas Pancrea
39 chr13:50625000-50640000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr13:50625200-50639800 Weak transcription HepG2 liver
41 chr13:50625400-50654200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr13:50625600-50649000 Weak transcription Primary T killer memory cells from peripheral blood blood
43 chr13:50626400-50639800 Weak transcription Liver Liver
44 chr13:50626400-50641000 Weak transcription Fetal Intestine Small intestine
45 chr13:50626600-50654000 Weak transcription Placenta Amnion Placenta Amnion
46 chr13:50627000-50639800 Weak transcription Primary T cells fromperipheralblood blood
47 chr13:50627200-50641000 Weak transcription Fetal Intestine Large intestine
48 chr13:50627400-50639600 Weak transcription Primary neutrophils fromperipheralblood blood
49 chr13:50628400-50652400 Weak transcription Psoas Muscle Psoas
50 chr13:50629000-50640400 Weak transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015