Variant report

Variant	rs7325091
Chromosome Location	chr13:50693769-50693770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:50652169..50667024-chr13:50693268..50703943,57	K562	blood:
2	chr13:50678414..50681084-chr13:50693265..50695116,2	MCF-7	breast:
3	chr13:50667614..50670151-chr13:50691621..50693862,2	K562	blood:
4	chr13:50671212..50673944-chr13:50692534..50694326,2	K562	blood:
5	chr13:50679123..50681390-chr13:50691644..50694719,3	MCF-7	breast:
6	chr13:50683252..50684988-chr13:50691680..50694379,2	MCF-7	breast:
7	chr13:50652189..50666968-chr13:50693462..50701392,46	MCF-7	breast:
8	chr13:50655939..50659738-chr13:50693268..50696085,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000176124	Chromatin interaction
ENSG00000214359	Chromatin interaction
ENSG00000231607	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12100048	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs12583615	1.00[CHB][hapmap]
rs12584069	1.00[CHB][hapmap]
rs17073655	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs17073724	1.00[CHB][hapmap]
rs17073826	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17073834	0.84[EUR][1000 genomes]
rs17471092	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807033	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs1963729	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2066540	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs2066552	0.86[CEU][hapmap]
rs2066553	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs2066555	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs2066559	0.83[EUR][1000 genomes]
rs2066562	0.87[EUR][1000 genomes]
rs2066565	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2066586	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2066598	0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2177313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2181267	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2181268	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs2407882	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs60926548	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61961306	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61961324	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61962359	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561571	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs6561572	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs6561575	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs6561576	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66559968	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7140070	0.84[EUR][1000 genomes]
rs73196768	0.84[EUR][1000 genomes]
rs732729	1.00[CHB][hapmap]
rs7334063	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs7336927	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7339181	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs790944	0.86[EUR][1000 genomes]
rs7981648	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982125	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs7984332	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs7984907	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7986364	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7990502	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs7991744	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994224	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs7995192	1.00[JPT][hapmap]
rs7995557	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs7998223	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs9596240	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832608	chr13:50678628-50888413	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv1041501	chr13:50683189-50795195	Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7325091	TRIM13	Cis_1M	lymphoblastoid	RTeQTL
rs7325091	DLEU1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50658000-50697200	Weak transcription	HSMMtube	muscle
2	chr13:50659800-50697200	Weak transcription	Hela-S3	cervix
3	chr13:50673000-50695600	Weak transcription	Fetal Intestine Large	intestine
4	chr13:50673800-50693800	Weak transcription	K562	blood
5	chr13:50673800-50697600	Weak transcription	HSMM	muscle
6	chr13:50674000-50693800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr13:50674000-50695000	Weak transcription	Fetal Muscle Leg	muscle
8	chr13:50674000-50695400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr13:50674000-50695600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr13:50674000-50697200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:50674000-50697600	Weak transcription	Esophagus	oesophagus
12	chr13:50674200-50695400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr13:50674600-50695400	Weak transcription	Fetal Intestine Small	intestine
14	chr13:50676800-50695800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr13:50679200-50697200	Weak transcription	NH-A	brain
16	chr13:50681400-50693800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:50681400-50697200	Weak transcription	Fetal Kidney	kidney
18	chr13:50682000-50694600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr13:50682000-50697200	Weak transcription	NHDF-Ad	bronchial
20	chr13:50682200-50696600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr13:50682800-50698000	Weak transcription	Ovary	ovary
22	chr13:50685200-50695400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr13:50689000-50693800	Weak transcription	HepG2	liver
24	chr13:50689000-50697200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr13:50689200-50697600	Weak transcription	Fetal Stomach	stomach
26	chr13:50689600-50695800	Weak transcription	Brain Anterior Caudate	brain
27	chr13:50689800-50695000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr13:50689800-50695000	Weak transcription	Pancreas	Pancrea
29	chr13:50689800-50695800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr13:50690000-50693800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr13:50690000-50695000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr13:50690000-50695400	Weak transcription	Brain Hippocampus Middle	brain
33	chr13:50690000-50695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr13:50690000-50695600	Weak transcription	Fetal Lung	lung
35	chr13:50690000-50695600	Weak transcription	Spleen	Spleen
36	chr13:50690000-50696000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr13:50690000-50696200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr13:50690000-50696800	Weak transcription	Stomach Mucosa	stomach
39	chr13:50690000-50697000	Weak transcription	Brain Angular Gyrus	brain
40	chr13:50690000-50698000	Weak transcription	Gastric	stomach
41	chr13:50690200-50693800	Weak transcription	Liver	Liver
42	chr13:50690200-50693800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr13:50690200-50694800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr13:50690200-50695000	Weak transcription	Left Ventricle	heart
45	chr13:50690200-50695000	Weak transcription	Psoas Muscle	Psoas
46	chr13:50690200-50695000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr13:50690200-50695000	Weak transcription	Thymus	Thymus
48	chr13:50690200-50695400	Weak transcription	Right Ventricle	heart
49	chr13:50690200-50695600	Weak transcription	Lung	lung
50	chr13:50690200-50696200	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links