The 2.0 version of rSNPBase

Variant report

Variant rs6561576
Chromosome Location chr13:50677675-50677676
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:50658000-50697200 Weak transcription HSMMtube muscle
2 chr13:50659800-50681600 Weak transcription Brain Cingulate Gyrus brain
3 chr13:50659800-50697200 Weak transcription Hela-S3 cervix
4 chr13:50666400-50680200 Weak transcription Primary T killer naive cells fromperipheralblood blood
5 chr13:50666400-50680400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr13:50666600-50680000 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr13:50669200-50678800 Weak transcription Muscle Satellite Cultured Cells --
8 chr13:50671600-50689800 Weak transcription Colonic Mucosa Colon
9 chr13:50672000-50689400 Weak transcription Right Ventricle heart
10 chr13:50673000-50678600 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr13:50673000-50680600 Weak transcription Duodenum Mucosa Duodenum
12 chr13:50673000-50695600 Weak transcription Fetal Intestine Large intestine
13 chr13:50673200-50682600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr13:50673600-50678400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr13:50673600-50679000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr13:50673600-50679800 Weak transcription Adipose Nuclei Adipose
17 chr13:50673600-50680200 Weak transcription Fetal Heart heart
18 chr13:50673600-50680600 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr13:50673600-50681000 Weak transcription Fetal Lung lung
20 chr13:50673600-50688400 Weak transcription HepG2 liver
21 chr13:50673600-50690400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr13:50673800-50678000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr13:50673800-50678000 Weak transcription Right Atrium heart
24 chr13:50673800-50678200 Weak transcription Primary T cells from cord blood blood
25 chr13:50673800-50678600 Weak transcription HUES64 Cell Line embryonic stem cell
26 chr13:50673800-50678600 Weak transcription Osteobl bone
27 chr13:50673800-50679000 Weak transcription NH-A brain
28 chr13:50673800-50680600 Weak transcription Primary neutrophils fromperipheralblood blood
29 chr13:50673800-50680600 Weak transcription Brain Substantia Nigra brain
30 chr13:50673800-50681000 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr13:50673800-50693800 Weak transcription K562 blood
32 chr13:50673800-50697600 Weak transcription HSMM muscle
33 chr13:50674000-50678000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr13:50674000-50678000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr13:50674000-50678400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr13:50674000-50679000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr13:50674000-50679000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
38 chr13:50674000-50679000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr13:50674000-50679400 Weak transcription Primary hematopoietic stem cells blood
40 chr13:50674000-50679600 Weak transcription Lung lung
41 chr13:50674000-50680400 Weak transcription Monocytes-CD14+_RO01746 blood
42 chr13:50674000-50680600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr13:50674000-50680600 Weak transcription Brain Anterior Caudate brain
44 chr13:50674000-50680800 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr13:50674000-50681400 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr13:50674000-50681400 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr13:50674000-50681600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
48 chr13:50674000-50684800 Weak transcription Primary T cells fromperipheralblood blood
49 chr13:50674000-50689400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr13:50674000-50689400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015