Variant report

Variant	rs73196731
Chromosome Location	chr13:50578577-50578578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50571846..50573402-chr13:50576852..50578789,2	MCF-7	breast:
2	chr13:50576641..50578970-chr13:50694354..50696520,2	K562	blood:
3	chr13:50577257..50579543-chr13:50698927..50702304,3	K562	blood:

Variant related genes	Relation type
ENSG00000231607	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs1043208	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492746	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1063181	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1063183	0.90[EUR][1000 genomes]
rs12100038	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12100048	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12583615	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12583637	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12583652	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12583823	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12584069	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584122	0.81[EUR][1000 genomes]
rs12585753	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323451	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17073655	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17073682	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17073724	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1807033	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2066540	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066546	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066547	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066552	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066553	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066555	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2066559	1.00[ASN][1000 genomes]
rs2066562	1.00[ASN][1000 genomes]
rs2066565	1.00[ASN][1000 genomes]
rs2066566	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2177313	1.00[ASN][1000 genomes]
rs2181267	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2181268	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2407881	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2407882	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41308548	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4614628	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55638467	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55727821	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55869555	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57230741	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59931782	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60574696	0.81[EUR][1000 genomes]
rs60583460	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60828549	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60926548	1.00[ASN][1000 genomes]
rs61960398	0.81[EUR][1000 genomes]
rs61960442	0.84[ASN][1000 genomes]
rs61960445	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61960446	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61960447	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61960449	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61960450	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61960451	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61960454	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61960455	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61960457	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61961261	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61961263	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61961294	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961298	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961299	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961301	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961302	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961303	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961304	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61961305	1.00[ASN][1000 genomes]
rs61961306	0.84[ASN][1000 genomes]
rs61961323	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61961324	1.00[ASN][1000 genomes]
rs61961325	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61961327	1.00[ASN][1000 genomes]
rs61961328	1.00[ASN][1000 genomes]
rs6561571	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6561572	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6561575	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6561576	1.00[ASN][1000 genomes]
rs66559968	1.00[ASN][1000 genomes]
rs66756338	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7319351	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73196708	0.84[ASN][1000 genomes]
rs73196734	1.00[ASN][1000 genomes]
rs73196744	0.95[ASN][1000 genomes]
rs7325993	0.86[ASN][1000 genomes]
rs732729	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7328892	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7334063	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336477	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7336927	1.00[ASN][1000 genomes]
rs7339181	1.00[ASN][1000 genomes]
rs74078717	0.85[EUR][1000 genomes]
rs790944	1.00[ASN][1000 genomes]
rs7982125	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7984332	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7984907	1.00[ASN][1000 genomes]
rs7986364	1.00[ASN][1000 genomes]
rs7986432	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7990502	0.89[EUR][1000 genomes]
rs7991454	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7992903	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7994224	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7995557	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7997305	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7997402	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7997638	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998223	1.00[ASN][1000 genomes]
rs7998391	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9670083	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73196731	TRIM13	cis	Nerve Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50571800-50585200	Weak transcription	Gastric	stomach
2	chr13:50572000-50585800	Weak transcription	Ovary	ovary
3	chr13:50572600-50579200	Weak transcription	HSMMtube	muscle
4	chr13:50572600-50589600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:50572800-50578800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr13:50572800-50584400	Weak transcription	K562	blood
7	chr13:50573000-50594600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:50573400-50580400	Weak transcription	Small Intestine	intestine
9	chr13:50573600-50578600	Weak transcription	Spleen	Spleen
10	chr13:50573600-50580000	Weak transcription	Colonic Mucosa	Colon
11	chr13:50573800-50581000	Strong transcription	Fetal Thymus	thymus
12	chr13:50573800-50585000	Weak transcription	Left Ventricle	heart
13	chr13:50573800-50585800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr13:50573800-50588600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr13:50573800-50589400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr13:50573800-50590200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr13:50574000-50580400	Strong transcription	Osteobl	bone
18	chr13:50574000-50584800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr13:50574000-50585000	Weak transcription	Aorta	Aorta
20	chr13:50574000-50585600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr13:50574000-50586000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr13:50574000-50599600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr13:50574200-50581200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr13:50574200-50589000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr13:50574200-50591000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr13:50574400-50578800	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr13:50574600-50580000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
28	chr13:50574600-50588800	Weak transcription	Stomach Mucosa	stomach
29	chr13:50574800-50578600	Genic enhancers	Dnd41	blood
30	chr13:50574800-50579800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr13:50574800-50580400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr13:50574800-50580400	Weak transcription	Brain Substantia Nigra	brain
33	chr13:50574800-50580600	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr13:50574800-50580800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr13:50574800-50580800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr13:50574800-50584400	Weak transcription	Fetal Heart	heart
37	chr13:50574800-50584600	Weak transcription	Adipose Nuclei	Adipose
38	chr13:50574800-50584600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr13:50574800-50584600	Weak transcription	HMEC	breast
40	chr13:50574800-50585000	Weak transcription	NHEK	skin
41	chr13:50574800-50585800	Weak transcription	Fetal Kidney	kidney
42	chr13:50574800-50586200	Weak transcription	HepG2	liver
43	chr13:50574800-50588000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr13:50574800-50588600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr13:50575000-50578600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr13:50575000-50579800	Strong transcription	Fetal Stomach	stomach
47	chr13:50575000-50580400	Weak transcription	NHLF	lung
48	chr13:50575000-50586200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr13:50575200-50578800	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr13:50575200-50580400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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