Variant report

Variant	rs7334063
Chromosome Location	chr13:50569916-50569917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:132)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:132 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:50569618-50571827	GM19193	blood:	n/a	n/a
2	PAX5	chr13:50569650-50570178	GM12878	blood:	n/a	n/a
3	ATF2	chr13:50569598-50570038	GM12878	blood:	n/a	n/a
4	TBL1XR1	chr13:50569699-50571799	GM12878	blood:	n/a	n/a
5	RELA	chr13:50569611-50571801	GM12891	blood:	n/a	n/a
6	STAT5A	chr13:50569689-50570229	GM12878	blood:	n/a	n/a
7	BATF	chr13:50569706-50570107	GM12878	blood:	n/a	n/a
8	ATF2	chr13:50569512-50570622	GM12878	blood:	n/a	n/a
9	POLR2A	chr13:50569733-50571768	Raji	blood:	n/a	n/a
10	POU2F2	chr13:50569663-50570057	GM12878	blood:	n/a	n/a
11	POLR2A	chr13:50569475-50571004	GM12892	blood:	n/a	n/a
12	MXI1	chr13:50569870-50572252	SK-N-SH	brain:	n/a	n/a
13	SP1	chr13:50569701-50570118	GM12878	blood:	n/a	n/a
14	TCF12	chr13:50569752-50569931	GM12878	blood:	n/a	n/a
15	POLR2A	chr13:50569900-50571749	GM15510	blood:	n/a	n/a
16	POLR2A	chr13:50569712-50570994	GM12891	blood:	n/a	n/a
17	CUX1	chr13:50569774-50570163	GM12878	blood:	n/a	n/a
18	POLR2A	chr13:50569753-50570236	ECC-1	luminal epithelium:	n/a	n/a
19	POLR2A	chr13:50569715-50571809	NB4	blood:	n/a	n/a
20	POU2F2	chr13:50569897-50570091	GM12878	blood:	n/a	n/a
21	NFATC1	chr13:50569559-50570343	GM12878	blood:	n/a	n/a
22	SPI1	chr13:50569691-50570032	GM12878	blood:	n/a	n/a
23	NFIC	chr13:50569419-50571022	GM12878	blood:	n/a	chr13:50570591-50570619
24	ETS1	chr13:50569597-50570213	GM12878	blood:	n/a	chr13:50569940-50569953 chr13:50569963-50569970
25	WRNIP1	chr13:50569785-50570376	GM12878	blood:	n/a	n/a
26	POLR2A	chr13:50569661-50572069	MCF-7	breast:	n/a	n/a
27	SPI1	chr13:50569743-50569921	GM12878	blood:	n/a	n/a
28	MXI1	chr13:50569781-50570299	GM12878	blood:	n/a	n/a
29	MTA3	chr13:50569439-50572089	GM12878	blood:	n/a	n/a
30	SPI1	chr13:50569408-50570160	GM12878	blood:	n/a	n/a
31	RELA	chr13:50569611-50570230	GM12878	blood:	n/a	n/a
32	RELA	chr13:50569691-50570055	GM12892	blood:	n/a	n/a
33	POLR2A	chr13:50569734-50571800	GM18951	blood:	n/a	n/a
34	BATF	chr13:50569722-50570042	GM12878	blood:	n/a	n/a
35	EP300	chr13:50569731-50570079	GM12878	blood:	n/a	n/a
36	POLR2A	chr13:50569883-50571931	HUVEC	blood vessel:	n/a	n/a
37	YY1	chr13:50569769-50570288	GM12878	blood:	n/a	n/a
38	HEY1	chr13:50569907-50570173	K562	blood:	n/a	n/a
39	POLR2A	chr13:50569532-50571007	GM12892	blood:	n/a	n/a
40	POLR2A	chr13:50569739-50570568	GM12891	blood:	n/a	n/a
41	SRF	chr13:50569753-50570086	GM12878	blood:	n/a	chr13:50569899-50569912
42	POLR2A	chr13:50569785-50572044	K562	blood:	n/a	n/a
43	ELF1	chr13:50569725-50570027	GM12878	blood:	n/a	n/a
44	MAX	chr13:50569726-50571815	NB4	blood:	n/a	n/a
45	POLR2A	chr13:50569806-50572944	MCF10A-Er-Src	breast:	n/a	n/a
46	EP300	chr13:50569621-50570156	GM12878	blood:	n/a	n/a
47	MYC	chr13:50569638-50571912	NB4	blood:	n/a	n/a
48	POLR2A	chr13:50569828-50572527	K562	blood:	n/a	n/a
49	POLR2A	chr13:50569868-50571018	U87	brain:	n/a	n/a
50	POLR2A	chr13:50569758-50571876	IMR90	lung:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:50510078..50512694-chr13:50569483..50571768,3	MCF-7	breast:
2	chr13:50507293..50510312-chr13:50568081..50571220,3	MCF-7	breast:
3	chr13:50568991..50573569-chr13:50697831..50701767,8	K562	blood:
4	chr13:50365087..50367801-chr13:50569333..50572997,5	MCF-7	breast:
5	chr13:50242666..50244239-chr13:50569416..50571466,2	MCF-7	breast:
6	chr13:50569368..50571479-chr13:50698927..50701104,2	MCF-7	breast:
7	chr13:50569748..50573186-chr13:50654848..50657793,4	MCF-7	breast:
8	chr13:50569852..50573038-chr13:50651628..50659276,11	K562	blood:
9	chr13:50568781..50571479-chr13:50962860..50965023,2	K562	blood:
10	chr13:50569462..50575212-chr13:50651363..50657415,15	K562	blood:
11	chr13:50569315..50571977-chr13:50588593..50590941,4	K562	blood:
12	chr13:50569500..50573569-chr13:50696112..50701767,10	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPRYD7-1	chr13:50567929-50570895	NONHSAT033771

No data

Variant related genes	Relation type
TRIM13	TF binding region
ENSG00000203547	Chromatin interaction
ENSG00000231607	Chromatin interaction
ENSG00000102753	Chromatin interaction
ENSG00000123178	Chromatin interaction
ENSG00000198553	Chromatin interaction
ENSG00000176124	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs1043208	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492746	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1063181	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1063183	0.86[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.81[EUR][1000 genomes]
rs12100038	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12100048	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12583615	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12583637	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12583652	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12583823	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12584069	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584122	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12585753	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585966	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1323451	1.00[ASN][1000 genomes]
rs17073655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17073682	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17073724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17073826	1.00[CHB][hapmap]
rs1807033	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2066540	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066546	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066547	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066552	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066553	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066555	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2066559	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2066562	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2066565	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2066566	1.00[ASN][1000 genomes]
rs2177313	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2181267	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2181268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2407881	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2407882	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41308548	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4614628	0.81[EUR][1000 genomes]
rs55638467	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55727821	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55869555	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57230741	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59931782	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60574696	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60583460	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60828549	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60926548	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61960398	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61960442	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61960445	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61960446	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61960447	0.83[EUR][1000 genomes]
rs61960449	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61960450	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61960451	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61960454	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61960455	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61960457	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61961261	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61961263	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61961294	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961298	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961299	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961301	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961302	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961303	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961304	1.00[ASN][1000 genomes]
rs61961305	1.00[ASN][1000 genomes]
rs61961306	0.95[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs61961323	1.00[ASN][1000 genomes]
rs61961324	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61961325	1.00[ASN][1000 genomes]
rs61961327	1.00[ASN][1000 genomes]
rs61961328	1.00[ASN][1000 genomes]
rs6561571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6561572	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6561575	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[ASN][1000 genomes]
rs6561576	1.00[ASN][1000 genomes]
rs66559968	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66756338	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140070	0.86[AFR][1000 genomes]
rs7319351	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73196708	0.84[ASN][1000 genomes]
rs73196731	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73196734	1.00[ASN][1000 genomes]
rs73196744	0.95[ASN][1000 genomes]
rs7325091	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs7325993	0.86[ASN][1000 genomes]
rs732729	0.87[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7328892	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7336477	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7336927	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7339181	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74078717	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs790944	1.00[ASN][1000 genomes]
rs7981648	1.00[CHB][hapmap];0.90[GIH][hapmap]
rs7982125	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[ASN][1000 genomes]
rs7984332	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7984907	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7986364	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7986432	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7990502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7991454	0.86[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.81[EUR][1000 genomes]
rs7992903	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7994224	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7995557	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7997305	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7997402	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7997638	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998223	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7998391	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9670083	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs7334063	TRIM13	cis	cerebellum	SCAN
rs7334063	DLEU1	cis	lymphoblastoid	seeQTL
rs7334063	KCNRG	cis	cerebellum	SCAN
rs7334063	PCDH8	cis	parietal	SCAN
rs7334063	C13orf1	cis	cerebellum	SCAN
rs7334063	TRIM13	cis	Nerve Tibial	GTEx
rs7334063	RB1	cis	cerebellum	SCAN
rs7334063	DLEU1	Cis_1M	lymphoblastoid	RTeQTL
rs7334063	TRIM13	Cis_1M	lymphoblastoid	RTeQTL
rs7334063	KIAA1704	cis	cerebellum	SCAN

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50539000-50570000	Weak transcription	Fetal Intestine Small	intestine
2	chr13:50543600-50570400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:50546000-50570000	Weak transcription	NHLF	lung
4	chr13:50551000-50570000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr13:50551000-50570200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr13:50551400-50570200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:50552400-50570200	Weak transcription	Lung	lung
8	chr13:50552800-50570200	Weak transcription	Spleen	Spleen
9	chr13:50553600-50570000	Weak transcription	Left Ventricle	heart
10	chr13:50556800-50570200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:50557200-50570000	Weak transcription	Aorta	Aorta
12	chr13:50558200-50570000	Weak transcription	Esophagus	oesophagus
13	chr13:50560000-50570000	Weak transcription	Pancreas	Pancrea
14	chr13:50561200-50570000	Weak transcription	Psoas Muscle	Psoas
15	chr13:50562200-50570000	Weak transcription	Small Intestine	intestine
16	chr13:50562600-50570000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr13:50563600-50570000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr13:50565000-50570000	Weak transcription	Fetal Brain Male	brain
19	chr13:50565000-50570000	Weak transcription	Stomach Mucosa	stomach
20	chr13:50565600-50570000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr13:50566000-50570000	Weak transcription	Liver	Liver
22	chr13:50566800-50570000	Weak transcription	Osteobl	bone
23	chr13:50567400-50570000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr13:50567600-50570400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:50568200-50570000	Weak transcription	HSMM	muscle
26	chr13:50569000-50570000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr13:50569400-50570200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
28	chr13:50569400-50570200	Flanking Active TSS	GM12878-XiMat	blood
29	chr13:50569400-50570600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr13:50569400-50570800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr13:50569600-50570000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr13:50569600-50570000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr13:50569600-50570000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr13:50569600-50570000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr13:50569600-50570000	Enhancers	Fetal Thymus	thymus
36	chr13:50569600-50570000	Enhancers	K562	blood
37	chr13:50569600-50570000	Enhancers	NHDF-Ad	bronchial
38	chr13:50569600-50570200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
39	chr13:50569600-50570200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
40	chr13:50569600-50570200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
41	chr13:50569600-50570200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr13:50569600-50570400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr13:50569600-50570400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr13:50569600-50570400	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr13:50569600-50570600	Flanking Active TSS	Primary B cells from cord blood	blood
46	chr13:50569600-50570600	Flanking Active TSS	Primary hematopoietic stem cells	blood
47	chr13:50569600-50572200	Active TSS	Brain Hippocampus Middle	brain
48	chr13:50569800-50570000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr13:50569800-50570000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
50	chr13:50569800-50570000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links