Variant report

Variant	rs59087536
Chromosome Location	chr3:115539019-115539020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:115503109..115503905-chr3:115538714..115539251,2	MCF-7	breast:
2	chr14:21009535..21010055-chr3:115538661..115539225,3	MCF-7	breast:
3	chr3:114865311..114866250-chr3:115538474..115539205,2	MCF-7	breast:
4	chr3:114546419..114546925-chr3:115538682..115539249,2	MCF-7	breast:
5	chr3:115501914..115505039-chr3:115538992..115541569,3	K562	blood:
6	chr3:114936072..114937081-chr3:115538338..115539235,5	MCF-7	breast:
7	chr3:114810826..114811584-chr3:115538342..115539212,2	MCF-7	breast:
8	chr3:114081376..114081975-chr3:115538427..115539222,2	MCF-7	breast:
9	chr3:114102398..114103175-chr3:115538575..115539288,2	MCF-7	breast:
10	chr3:115411462..115412193-chr3:115538778..115539306,2	K562	blood:
11	chr3:114936378..114937048-chr3:115538321..115539367,3	K562	blood:
12	chr11:41786030..41786550-chr3:115538707..115539310,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17711047	0.97[EUR][1000 genomes]
rs73858079	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73858080	0.87[EUR][1000 genomes]
rs7628605	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931948	chr3:114884574-115802562	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv997598	chr3:115238131-115643421	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv877358	chr3:115396581-115551931	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv877359	chr3:115397785-115551931	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv2760762	chr3:115476222-115807650	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv1802388	chr3:115536488-115543891	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115524600-115542000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:115526600-115573200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:115528400-115544200	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:115528600-115539600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:115529600-115547000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:115534000-115543800	Weak transcription	Hela-S3	cervix
7	chr3:115537200-115543600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:115537400-115542000	Weak transcription	NHEK	skin
9	chr3:115538600-115539200	Enhancers	Brain Substantia Nigra	brain
10	chr3:115539000-115539800	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr3:115539000-115539800	Enhancers	HepG2	liver
12	chr3:115539000-115542000	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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