Variant report

Variant	rs73858080
Chromosome Location	chr3:115549909-115549910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17711047	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59087536	0.87[EUR][1000 genomes]
rs73858079	0.97[EUR][1000 genomes]
rs73858088	1.00[ASN][1000 genomes]
rs7628605	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931948	chr3:114884574-115802562	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv997598	chr3:115238131-115643421	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv877358	chr3:115396581-115551931	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv877359	chr3:115397785-115551931	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv2760762	chr3:115476222-115807650	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115526600-115573200	Weak transcription	Brain Angular Gyrus	brain
2	chr3:115544400-115552000	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:115544400-115567400	Weak transcription	Hela-S3	cervix
4	chr3:115544600-115550000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:115546600-115550200	Weak transcription	Brain Anterior Caudate	brain
6	chr3:115547600-115550000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:115547600-115550000	Enhancers	HMEC	breast
8	chr3:115547600-115551800	Weak transcription	Fetal Heart	heart
9	chr3:115547800-115550200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:115548200-115550200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:115549000-115553200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr3:115549200-115550000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:115549600-115550200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:115549600-115550400	Enhancers	NH-A	brain
15	chr3:115549600-115550600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:115549600-115550600	Enhancers	Brain Germinal Matrix	brain
17	chr3:115549600-115550600	Flanking Active TSS	NHEK	skin
18	chr3:115549800-115550400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:115549800-115550400	Enhancers	HepG2	liver
20	chr3:115549800-115551000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr3:115549800-115551600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr3:115549800-115552000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr3:115549800-115553600	Enhancers	NHDF-Ad	bronchial

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