Variant report

Variant	rs73858088
Chromosome Location	chr3:115586774-115586775
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17711047	1.00[ASN][1000 genomes]
rs59549684	0.99[AFR][1000 genomes]
rs73858080	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931948	chr3:114884574-115802562	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv997598	chr3:115238131-115643421	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv2760762	chr3:115476222-115807650	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv963533	chr3:115585340-115587845	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115577600-115595000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:115581800-115591000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:115582400-115590800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:115583400-115589200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:115583600-115587000	Weak transcription	Aorta	Aorta
6	chr3:115584000-115591200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:115585400-115596200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:115585800-115590600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:115586400-115587000	Enhancers	HepG2	liver
10	chr3:115586600-115586800	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links