Variant report

Variant	rs59097029
Chromosome Location	chr12:104536578-104536579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr12:104536440-104536603	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:104532395..104534218-chr12:104535636..104537137,2	K562	blood:
2	chr12:104536331..104537899-chr12:104541231..104543008,2	K562	blood:
3	chr12:104534094..104536721-chr12:104557947..104560428,2	MCF-7	breast:

Variant related genes	Relation type
NFYB	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10861174	0.88[ASN][1000 genomes]
rs11111948	0.82[ASN][1000 genomes]
rs11111949	0.82[ASN][1000 genomes]
rs11832165	0.94[ASN][1000 genomes]
rs11832923	0.82[ASN][1000 genomes]
rs11833441	0.94[ASN][1000 genomes]
rs11837739	0.87[AMR][1000 genomes]
rs11838096	0.94[ASN][1000 genomes]
rs11838099	0.94[ASN][1000 genomes]
rs12299988	0.82[ASN][1000 genomes]
rs12312443	0.82[ASN][1000 genomes]
rs17035284	0.94[ASN][1000 genomes]
rs17193036	0.86[AMR][1000 genomes]
rs17193064	0.86[AMR][1000 genomes]
rs17193219	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17805891	0.86[AMR][1000 genomes]
rs17806516	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17806577	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41453549	0.82[ASN][1000 genomes]
rs4257050	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57036458	0.94[ASN][1000 genomes]
rs58420147	0.94[ASN][1000 genomes]
rs59259947	0.82[ASN][1000 genomes]
rs59714382	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60333117	0.82[ASN][1000 genomes]
rs61109788	0.82[ASN][1000 genomes]
rs61116111	0.94[ASN][1000 genomes]
rs61234792	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61440530	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61485460	0.94[ASN][1000 genomes]
rs61497238	0.94[ASN][1000 genomes]
rs61610230	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61665972	0.94[ASN][1000 genomes]
rs7313573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7979713	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823607	chr12:104506318-104549541	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	n/a
2	nsv1045725	chr12:104524153-104614108	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
3	nsv541586	chr12:104524153-104614108	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
4	esv1836100	chr12:104531180-104558476	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
5	esv1836581	chr12:104531180-104558476	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
6	esv1842062	chr12:104531180-104638773	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104533000-104537800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:104533000-104544200	Weak transcription	Pancreas	Pancrea
3	chr12:104533000-104560600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:104533200-104537800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr12:104534200-104537400	Enhancers	Placenta	Placenta

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