Variant report

Variant	rs61665972
Chromosome Location	chr12:104604653-104604654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:104603017..104605976-chr12:104690330..104692647,2	MCF-7	breast:
2	chr12:104603545..104605144-chr12:104611962..104614004,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10861174	0.94[ASN][1000 genomes]
rs11111948	0.88[ASN][1000 genomes]
rs11111949	0.88[ASN][1000 genomes]
rs11832165	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11832923	0.88[ASN][1000 genomes]
rs11833441	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11838096	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11838099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12299988	0.88[ASN][1000 genomes]
rs12312443	0.88[ASN][1000 genomes]
rs17035284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17806577	0.94[ASN][1000 genomes]
rs28651552	0.82[ASN][1000 genomes]
rs41453549	0.88[ASN][1000 genomes]
rs56406045	0.82[ASN][1000 genomes]
rs57036458	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57066809	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58420147	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59097029	0.94[ASN][1000 genomes]
rs59259947	0.88[ASN][1000 genomes]
rs60333117	0.88[ASN][1000 genomes]
rs61109788	0.88[ASN][1000 genomes]
rs61116111	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61234792	0.94[ASN][1000 genomes]
rs61485460	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61497238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7313573	0.94[ASN][1000 genomes]
rs7979713	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045725	chr12:104524153-104614108	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
2	nsv541586	chr12:104524153-104614108	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
3	esv1842062	chr12:104531180-104638773	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	n/a
4	nsv899493	chr12:104548613-104703228	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv899494	chr12:104561521-104806232	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104599200-104609200	Weak transcription	Ovary	ovary
2	chr12:104601600-104606400	Weak transcription	A549	lung
3	chr12:104602000-104609200	Weak transcription	HSMM	muscle

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