Variant report

Variant	rs5910006
Chromosome Location	chrX:122615655-122615656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs5911627	0.88[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs6649018	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs6649020	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869296	chrX:122602829-122716872	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532913	chrX:122603383-122723979	Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:122611000-122616000	Weak transcription	Fetal Stomach	stomach
2	chrX:122613400-122616800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chrX:122614000-122615800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chrX:122614400-122616200	Weak transcription	Brain Angular Gyrus	brain
5	chrX:122614800-122617000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chrX:122615000-122615800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chrX:122615000-122616000	Weak transcription	Brain Anterior Caudate	brain
8	chrX:122615000-122616000	Weak transcription	Brain Cingulate Gyrus	brain
9	chrX:122615200-122616000	Weak transcription	Brain Germinal Matrix	brain
10	chrX:122615200-122616000	Weak transcription	Brain Hippocampus Middle	brain
11	chrX:122615400-122616000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chrX:122615400-122616200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chrX:122615600-122616200	Enhancers	Fetal Lung	lung
14	chrX:122615600-122616200	Weak transcription	Rectal Smooth Muscle	rectum
15	chrX:122615600-122616400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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