Variant report

Variant	rs5911627
Chromosome Location	chrX:122612031-122612032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs5910006	0.88[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs6649020	0.84[CEU][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869296	chrX:122602829-122716872	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532913	chrX:122603383-122723979	Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:122583800-122614200	Weak transcription	Brain Germinal Matrix	brain
2	chrX:122601000-122614800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chrX:122604400-122615200	Weak transcription	Fetal Brain Female	brain
4	chrX:122605000-122615400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chrX:122609600-122614400	Weak transcription	Brain Cingulate Gyrus	brain
6	chrX:122610400-122614000	Weak transcription	Fetal Lung	lung
7	chrX:122610800-122613400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chrX:122611000-122613600	Weak transcription	Brain Angular Gyrus	brain
9	chrX:122611000-122616000	Weak transcription	Fetal Stomach	stomach
10	chrX:122611600-122615400	Weak transcription	Rectal Smooth Muscle	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links