Variant report

Variant	rs59104349
Chromosome Location	chr3:155241037-155241038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155239458..155242156-chr3:155242242..155245000,2	MCF-7	breast:
2	chr3:155235777..155238536-chr3:155239012..155241056,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57502066	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57665452	1.00[AMR][1000 genomes]
rs58775067	1.00[AMR][1000 genomes]
rs59394180	1.00[AMR][1000 genomes]
rs60465941	1.00[AMR][1000 genomes]
rs60548823	1.00[AMR][1000 genomes]
rs73873200	1.00[AMR][1000 genomes]
rs73873202	1.00[AMR][1000 genomes]
rs73874832	0.82[AFR][1000 genomes]
rs73874833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73874840	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:155230600-155241200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:155230600-155242800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:155230600-155243800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:155230600-155249000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:155230800-155241200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:155230800-155244400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:155230800-155248400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:155231200-155253000	Weak transcription	A549	lung
11	chr3:155232200-155241200	Weak transcription	Esophagus	oesophagus
12	chr3:155232200-155253000	Weak transcription	Fetal Intestine Large	intestine
13	chr3:155232200-155258800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
15	chr3:155232400-155241200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr3:155232400-155244000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:155232400-155247000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:155232400-155250400	Weak transcription	Gastric	stomach
19	chr3:155235400-155249000	Weak transcription	Fetal Intestine Small	intestine
20	chr3:155236200-155241200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:155236200-155249400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:155236400-155241200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:155237000-155248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:155238000-155249000	Strong transcription	Dnd41	blood
25	chr3:155238600-155241200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:155238800-155241200	Weak transcription	Fetal Thymus	thymus
27	chr3:155239400-155244000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr3:155239800-155248200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:155241000-155241800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr3:155241000-155241800	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:155241000-155241800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr3:155241000-155241800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:155241000-155242000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:155241000-155245000	Strong transcription	Thymus	Thymus

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