Variant report

Variant	rs60548823
Chromosome Location	chr3:155196249-155196250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57502066	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57665452	1.00[AMR][1000 genomes]
rs58775067	1.00[AMR][1000 genomes]
rs59104349	1.00[AMR][1000 genomes]
rs59394180	1.00[AMR][1000 genomes]
rs60465941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873200	1.00[AMR][1000 genomes]
rs73873202	1.00[AMR][1000 genomes]
rs73874833	1.00[AMR][1000 genomes]
rs73874840	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv877679	chr3:155128968-155204939	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155178400-155198800	Weak transcription	Thymus	Thymus
2	chr3:155180800-155200200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:155187200-155216200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:155193000-155196800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:155195000-155230400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:155195200-155199600	Weak transcription	Fetal Thymus	thymus
7	chr3:155195200-155203400	Strong transcription	Dnd41	blood
8	chr3:155196000-155198800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:155196000-155202600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:155196200-155231600	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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