Variant report

Variant	rs59104377
Chromosome Location	chr1:84828936-84828937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84819600..84821266-chr1:84826643..84829236,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6667517	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6669915	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830426	chr1:84704924-84856229	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84814200-84831400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:84825600-84829800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:84827000-84829000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:84827200-84829400	Enhancers	NHEK	skin
5	chr1:84827400-84829000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr1:84827600-84829400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:84828200-84829200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:84828200-84829200	Enhancers	HSMMtube	muscle
9	chr1:84828200-84829400	Enhancers	Aorta	Aorta
10	chr1:84828200-84829800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr1:84828400-84830800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:84828400-84830800	Weak transcription	HMEC	breast
13	chr1:84828400-84831600	Weak transcription	Psoas Muscle	Psoas
14	chr1:84828400-84831600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr1:84828400-84836400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:84828600-84829200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:84828600-84829200	Enhancers	Primary hematopoietic stem cells	blood
18	chr1:84828600-84829200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr1:84828800-84829000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:84828800-84829000	Flanking Active TSS	Brain Substantia Nigra	brain
21	chr1:84828800-84829000	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr1:84828800-84829000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr1:84828800-84829000	Enhancers	HSMM	muscle
24	chr1:84828800-84829000	Enhancers	HUVEC	blood vessel
25	chr1:84828800-84829200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:84828800-84829200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:84828800-84829200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:84828800-84829200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:84828800-84829200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr1:84828800-84829200	Flanking Active TSS	Brain Anterior Caudate	brain
31	chr1:84828800-84829200	Enhancers	Brain Hippocampus Middle	brain
32	chr1:84828800-84829200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr1:84828800-84829200	Enhancers	NHDF-Ad	bronchial
34	chr1:84828800-84829200	Enhancers	NHLF	lung
35	chr1:84828800-84829200	Enhancers	Osteobl	bone
36	chr1:84828800-84829800	Enhancers	Brain Angular Gyrus	brain
37	chr1:84828800-84829800	Enhancers	Brain Cingulate Gyrus	brain
38	chr1:84828800-84830800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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