Variant report
| Variant | rs59132240 |
|---|---|
| Chromosome Location | chr10:25591153-25591154 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs1413400 | 0.80[ASN][1000 genomes] |
| rs1416993 | 0.80[ASN][1000 genomes] |
| rs1416994 | 0.80[ASN][1000 genomes] |
| rs55801305 | 0.80[ASN][1000 genomes] |
| rs56084254 | 0.80[ASN][1000 genomes] |
| rs56257605 | 0.80[ASN][1000 genomes] |
| rs58585465 | 0.80[ASN][1000 genomes] |
| rs58942965 | 0.80[ASN][1000 genomes] |
| rs59521850 | 0.80[ASN][1000 genomes] |
| rs59722277 | 0.89[ASN][1000 genomes] |
| rs60268096 | 0.80[ASN][1000 genomes] |
| rs61082972 | 0.80[ASN][1000 genomes] |
| rs61105987 | 0.80[ASN][1000 genomes] |
| rs61108946 | 0.80[ASN][1000 genomes] |
| rs61530525 | 0.80[ASN][1000 genomes] |
| rs66463292 | 0.80[ASN][1000 genomes] |
| rs66539540 | 0.80[ASN][1000 genomes] |
| rs66810403 | 0.80[ASN][1000 genomes] |
| rs66924755 | 0.80[ASN][1000 genomes] |
| rs66963587 | 0.80[ASN][1000 genomes] |
| rs67069034 | 0.80[ASN][1000 genomes] |
| rs67389824 | 0.80[ASN][1000 genomes] |
| rs67675896 | 0.80[ASN][1000 genomes] |
| rs67733590 | 0.80[ASN][1000 genomes] |
| rs67963266 | 0.82[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs67969515 | 0.80[ASN][1000 genomes] |
| rs68159928 | 0.80[ASN][1000 genomes] |
| rs7093650 | 0.80[ASN][1000 genomes] |
| rs7093651 | 0.80[ASN][1000 genomes] |
| rs7093692 | 0.80[ASN][1000 genomes] |
| rs72792092 | 0.80[ASN][1000 genomes] |
| rs73608266 | 0.80[ASN][1000 genomes] |
| rs7476751 | 0.80[ASN][1000 genomes] |
| rs7904501 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761583 | chr10:25525657-25722444 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
Variant related diseases (count:1)
| Disease | PMID | Source |
|---|---|---|
| Ejection fraction in Tripanosoma cruzi seropositivity | 24324551 | GWAS catalog |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25582000-25592000 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
