Variant report

Variant	rs59132342
Chromosome Location	chr10:45159087-45159088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11812311	1.00[AMR][1000 genomes]
rs11812377	1.00[AMR][1000 genomes]
rs11813057	1.00[AMR][1000 genomes]
rs11813651	1.00[AMR][1000 genomes]
rs11813746	1.00[AMR][1000 genomes]
rs11815996	1.00[AMR][1000 genomes]
rs11816722	1.00[AMR][1000 genomes]
rs11816803	1.00[AMR][1000 genomes]
rs11817312	1.00[AMR][1000 genomes]
rs11818122	1.00[AMR][1000 genomes]
rs11818375	1.00[AMR][1000 genomes]
rs11818834	1.00[AMR][1000 genomes]
rs55956008	1.00[AMR][1000 genomes]
rs74138460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3373331	chr10:45156246-45160444	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
4	esv2584008	chr10:45157495-45159150	Bivalent Enhancer Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45155000-45159600	Enhancers	Fetal Muscle Leg	muscle
2	chr10:45156400-45161600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:45156400-45175800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:45157400-45162200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:45158000-45159600	Weak transcription	Fetal Stomach	stomach
6	chr10:45158000-45161400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:45158000-45161600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:45159000-45159800	Weak transcription	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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