Variant report

Variant	rs74138462
Chromosome Location	chr10:45162108-45162109
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11812311	1.00[AMR][1000 genomes]
rs11812377	1.00[AMR][1000 genomes]
rs11813057	1.00[AMR][1000 genomes]
rs11813651	1.00[AMR][1000 genomes]
rs11813746	1.00[AMR][1000 genomes]
rs11815996	1.00[AMR][1000 genomes]
rs11816722	1.00[AMR][1000 genomes]
rs11816803	1.00[AMR][1000 genomes]
rs11817312	1.00[AMR][1000 genomes]
rs11818122	1.00[AMR][1000 genomes]
rs11818375	1.00[AMR][1000 genomes]
rs11818834	1.00[AMR][1000 genomes]
rs55956008	1.00[AMR][1000 genomes]
rs59132342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45156400-45175800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:45157400-45162200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:45161600-45163800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:45161800-45162400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:45161800-45162600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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