Variant report

Variant	rs5914036
Chromosome Location	chrX:57016719-57016720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:57014508..57018582-chrX:57019789..57023581,7	K562	blood:
2	chrX:57015912..57017515-chrX:57021988..57023581,2	K562	blood:
3	chrX:57012865..57017046-chrX:57019294..57023199,7	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAAH2-6	chrX:57016668-57017079	NONHSAT137279

Variant related genes	Relation type
ENSG00000204271	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10521485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs150099	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs204166	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2071722	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs378487	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs5914037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap]
rs5914052	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs5914874	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap]
rs5914897	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap]
rs5960235	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs5960817	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap]
rs6612746	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs6612757	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs697664	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap]
rs707346	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs912956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:56980400-57020800	Weak transcription	Brain Angular Gyrus	brain
2	chrX:56986800-57019400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chrX:56987400-57021200	Weak transcription	Psoas Muscle	Psoas
4	chrX:56988000-57021000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chrX:56988800-57020600	Weak transcription	Brain Cingulate Gyrus	brain
6	chrX:56993000-57021000	Weak transcription	Fetal Brain Male	brain
7	chrX:56993200-57020600	Weak transcription	HSMMtube	muscle
8	chrX:56994400-57021000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chrX:56994800-57020600	Weak transcription	Brain Substantia Nigra	brain
10	chrX:56995400-57021000	Weak transcription	Fetal Stomach	stomach
11	chrX:56995400-57021200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chrX:56995600-57020800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chrX:56995800-57021000	Weak transcription	Hela-S3	cervix
14	chrX:56996000-57021000	Weak transcription	NHDF-Ad	bronchial
15	chrX:56998600-57019400	Weak transcription	Gastric	stomach
16	chrX:56998800-57020600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chrX:56999400-57020600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chrX:56999400-57021000	Weak transcription	Fetal Intestine Small	intestine
19	chrX:56999800-57020600	Weak transcription	Right Ventricle	heart
20	chrX:57000000-57017600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chrX:57001000-57021000	Weak transcription	K562	blood
22	chrX:57001400-57020600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chrX:57001600-57021400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
24	chrX:57001800-57020600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chrX:57002400-57019400	Weak transcription	Colon Smooth Muscle	Colon
26	chrX:57002600-57019400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chrX:57002800-57021200	Weak transcription	Lung	lung
28	chrX:57002800-57021400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chrX:57003000-57020800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chrX:57003200-57021000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chrX:57003800-57021200	Weak transcription	Esophagus	oesophagus
32	chrX:57004000-57019800	Weak transcription	Brain Hippocampus Middle	brain
33	chrX:57004800-57018800	Weak transcription	Stomach Mucosa	stomach
34	chrX:57005000-57019000	Weak transcription	Pancreas	Pancrea
35	chrX:57005200-57020800	Weak transcription	NH-A	brain
36	chrX:57005400-57020600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chrX:57005400-57020800	Weak transcription	HMEC	breast
38	chrX:57007000-57021200	Weak transcription	Placenta	Placenta
39	chrX:57008400-57021000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chrX:57009000-57021200	Weak transcription	Aorta	Aorta
41	chrX:57009600-57021000	Weak transcription	Brain Anterior Caudate	brain
42	chrX:57010000-57020600	Weak transcription	Duodenum Mucosa	Duodenum
43	chrX:57010200-57017600	Weak transcription	Brain Germinal Matrix	brain
44	chrX:57010400-57018200	Weak transcription	Osteobl	bone
45	chrX:57010400-57020200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chrX:57010400-57020400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chrX:57010400-57020600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chrX:57010600-57019000	Weak transcription	Fetal Brain Female	brain
49	chrX:57010600-57019400	Weak transcription	Ovary	ovary
50	chrX:57010600-57021000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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