Variant report

Variant	rs6612746
Chromosome Location	chrX:57019891-57019892
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:56839314..56842023-chrX:57019639..57021323,2	MCF-7	breast:
2	chrX:57005385..57007098-chrX:57018864..57021324,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10521485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs150099	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs204166	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2071722	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs378487	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs5914036	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs5914037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap]
rs5914052	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5914874	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5914897	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap]
rs5960235	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5960817	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs6612757	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs697664	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs707346	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs912956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:56980400-57020800	Weak transcription	Brain Angular Gyrus	brain
2	chrX:56987400-57021200	Weak transcription	Psoas Muscle	Psoas
3	chrX:56988000-57021000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chrX:56988800-57020600	Weak transcription	Brain Cingulate Gyrus	brain
5	chrX:56993000-57021000	Weak transcription	Fetal Brain Male	brain
6	chrX:56993200-57020600	Weak transcription	HSMMtube	muscle
7	chrX:56994400-57021000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chrX:56994800-57020600	Weak transcription	Brain Substantia Nigra	brain
9	chrX:56995400-57021000	Weak transcription	Fetal Stomach	stomach
10	chrX:56995400-57021200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chrX:56995600-57020800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chrX:56995800-57021000	Weak transcription	Hela-S3	cervix
13	chrX:56996000-57021000	Weak transcription	NHDF-Ad	bronchial
14	chrX:56998800-57020600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chrX:56999400-57020600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chrX:56999400-57021000	Weak transcription	Fetal Intestine Small	intestine
17	chrX:56999800-57020600	Weak transcription	Right Ventricle	heart
18	chrX:57001000-57021000	Weak transcription	K562	blood
19	chrX:57001400-57020600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chrX:57001600-57021400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
21	chrX:57001800-57020600	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chrX:57002800-57021200	Weak transcription	Lung	lung
23	chrX:57002800-57021400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chrX:57003000-57020800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chrX:57003200-57021000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chrX:57003800-57021200	Weak transcription	Esophagus	oesophagus
27	chrX:57005200-57020800	Weak transcription	NH-A	brain
28	chrX:57005400-57020600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chrX:57005400-57020800	Weak transcription	HMEC	breast
30	chrX:57007000-57021200	Weak transcription	Placenta	Placenta
31	chrX:57008400-57021000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chrX:57009000-57021200	Weak transcription	Aorta	Aorta
33	chrX:57009600-57021000	Weak transcription	Brain Anterior Caudate	brain
34	chrX:57010000-57020600	Weak transcription	Duodenum Mucosa	Duodenum
35	chrX:57010400-57020200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chrX:57010400-57020400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chrX:57010400-57020600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chrX:57010600-57021000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chrX:57010600-57021000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chrX:57010600-57021000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chrX:57010600-57021000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chrX:57010600-57021200	Weak transcription	Left Ventricle	heart
43	chrX:57010800-57020400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chrX:57010800-57020600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chrX:57010800-57021000	Weak transcription	Fetal Muscle Trunk	muscle
46	chrX:57010800-57021000	Weak transcription	HSMM	muscle
47	chrX:57010800-57021200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chrX:57010800-57021200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chrX:57012000-57020600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chrX:57012200-57021200	Weak transcription	Primary T cells fromperipheralblood	blood

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