Variant report

Variant	rs59140383
Chromosome Location	chr11:10073889-10073890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10072187..10074484-chr11:10077289..10078994,2	MCF-7	breast:
2	chr11:10072496..10075384-chr11:10088083..10089891,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1822290	1.00[AMR][1000 genomes]
rs2044145	1.00[AMR][1000 genomes]
rs2044146	1.00[AMR][1000 genomes]
rs2083712	1.00[AMR][1000 genomes]
rs36073664	1.00[AMR][1000 genomes]
rs4910093	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10066600-10078600	Weak transcription	Aorta	Aorta
2	chr11:10067000-10078400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:10067800-10078200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:10069000-10074400	Enhancers	Hela-S3	cervix
5	chr11:10071400-10074200	Enhancers	HepG2	liver
6	chr11:10071400-10074600	Enhancers	A549	lung
7	chr11:10072200-10074000	Enhancers	HUVEC	blood vessel
8	chr11:10072400-10101200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:10073000-10075000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:10073200-10074000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:10073400-10074000	Enhancers	NH-A	brain
12	chr11:10073400-10074000	Enhancers	NHDF-Ad	bronchial
13	chr11:10073600-10074000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:10073600-10074000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:10073600-10074000	Enhancers	Fetal Lung	lung
16	chr11:10073600-10074000	Enhancers	Ovary	ovary
17	chr11:10073600-10074000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr11:10073600-10074200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:10073600-10074200	Enhancers	Osteobl	bone
20	chr11:10073600-10074400	Enhancers	NHLF	lung
21	chr11:10073800-10074200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:10073800-10074400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr11:10073800-10074400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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