Variant report

Variant	rs59147615
Chromosome Location	chr10:4541405-4541406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs59812858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1041785	chr10:4507158-4564194	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv522046	chr10:4538492-4570425	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4539800-4541600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:4540000-4541600	Enhancers	Fetal Brain Female	brain
3	chr10:4540200-4541600	Enhancers	Fetal Stomach	stomach
4	chr10:4540200-4541800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:4540200-4542200	Enhancers	Colon Smooth Muscle	Colon
6	chr10:4540400-4541600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:4540400-4541600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr10:4540400-4541600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:4540400-4541600	Enhancers	HSMMtube	muscle
10	chr10:4540400-4541600	Enhancers	NH-A	brain
11	chr10:4540400-4541600	Enhancers	NHLF	lung
12	chr10:4540400-4541800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:4540400-4542200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:4540400-4542200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr10:4540400-4542200	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:4540400-4542200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:4540400-4542200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr10:4540400-4542200	Enhancers	HMEC	breast
19	chr10:4540400-4542200	Enhancers	HSMM	muscle
20	chr10:4540600-4541600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:4540600-4541600	Enhancers	Brain Hippocampus Middle	brain
22	chr10:4540600-4541600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:4540600-4542200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:4540600-4542200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:4540600-4542200	Enhancers	Psoas Muscle	Psoas
26	chr10:4540600-4551400	Weak transcription	Aorta	Aorta
27	chr10:4540800-4541600	Enhancers	NHEK	skin
28	chr10:4540800-4542000	Weak transcription	Right Ventricle	heart
29	chr10:4540800-4543200	Weak transcription	Gastric	stomach
30	chr10:4540800-4546800	Weak transcription	Left Ventricle	heart
31	chr10:4541000-4542000	Weak transcription	Ovary	ovary
32	chr10:4541000-4542200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:4541000-4542200	Enhancers	Stomach Smooth Muscle	stomach
34	chr10:4541200-4541600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr10:4541200-4541600	Flanking Active TSS	Osteobl	bone
36	chr10:4541200-4542200	Enhancers	Spleen	Spleen
37	chr10:4541200-4542400	Enhancers	Fetal Heart	heart
38	chr10:4541400-4541600	Enhancers	Fetal Intestine Small	intestine
39	chr10:4541400-4541800	Enhancers	Muscle Satellite Cultured Cells	--
40	chr10:4541400-4542200	Enhancers	Fetal Lung	lung
41	chr10:4541400-4542200	Enhancers	NHDF-Ad	bronchial
42	chr10:4541400-4542800	Weak transcription	HUVEC	blood vessel

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