Variant report

Variant	rs59812858
Chromosome Location	chr10:4540686-4540687
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59147615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74111808	1.00[EUR][1000 genomes]
rs74111810	1.00[EUR][1000 genomes]
rs74111824	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1041785	chr10:4507158-4564194	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv522046	chr10:4538492-4570425	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4539800-4540800	Enhancers	Right Ventricle	heart
2	chr10:4539800-4541600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:4540000-4541600	Enhancers	Fetal Brain Female	brain
4	chr10:4540200-4541200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr10:4540200-4541600	Enhancers	Fetal Stomach	stomach
6	chr10:4540200-4541800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:4540200-4542200	Enhancers	Colon Smooth Muscle	Colon
8	chr10:4540400-4541000	Enhancers	Brain Angular Gyrus	brain
9	chr10:4540400-4541000	Enhancers	Ovary	ovary
10	chr10:4540400-4541000	Flanking Active TSS	NHDF-Ad	bronchial
11	chr10:4540400-4541200	Flanking Active TSS	Fetal Heart	heart
12	chr10:4540400-4541400	Enhancers	Adipose Nuclei	Adipose
13	chr10:4540400-4541400	Enhancers	Fetal Muscle Leg	muscle
14	chr10:4540400-4541600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:4540400-4541600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr10:4540400-4541600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:4540400-4541600	Enhancers	HSMMtube	muscle
18	chr10:4540400-4541600	Enhancers	NH-A	brain
19	chr10:4540400-4541600	Enhancers	NHLF	lung
20	chr10:4540400-4541800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:4540400-4542200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:4540400-4542200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:4540400-4542200	Enhancers	Rectal Smooth Muscle	rectum
24	chr10:4540400-4542200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr10:4540400-4542200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr10:4540400-4542200	Enhancers	HMEC	breast
27	chr10:4540400-4542200	Enhancers	HSMM	muscle
28	chr10:4540600-4540800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:4540600-4540800	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr10:4540600-4540800	Enhancers	Gastric	stomach
31	chr10:4540600-4540800	Enhancers	Left Ventricle	heart
32	chr10:4540600-4541000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr10:4540600-4541000	Flanking Active TSS	Fetal Lung	lung
34	chr10:4540600-4541000	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr10:4540600-4541000	Flanking Active TSS	Osteobl	bone
36	chr10:4540600-4541400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:4540600-4541600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:4540600-4541600	Enhancers	Brain Hippocampus Middle	brain
39	chr10:4540600-4541600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr10:4540600-4542200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:4540600-4542200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:4540600-4542200	Enhancers	Psoas Muscle	Psoas
43	chr10:4540600-4551400	Weak transcription	Aorta	Aorta

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