Variant report

Variant	rs74111824
Chromosome Location	chr10:4570613-4570614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4569855..4572321-chr10:4573462..4575585,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11816349	1.00[AMR][1000 genomes]
rs56397847	0.95[AFR][1000 genomes]
rs56970098	0.98[AFR][1000 genomes]
rs57865065	0.95[AFR][1000 genomes]
rs58545396	0.95[AFR][1000 genomes]
rs58744892	0.95[AFR][1000 genomes]
rs59480230	0.95[AFR][1000 genomes]
rs59812858	1.00[EUR][1000 genomes]
rs7068449	1.00[AMR][1000 genomes]
rs74111808	1.00[EUR][1000 genomes]
rs74111810	1.00[EUR][1000 genomes]
rs74111812	1.00[AMR][1000 genomes]
rs74111814	0.95[AFR][1000 genomes]
rs74111815	0.95[AFR][1000 genomes]
rs74111819	1.00[AMR][1000 genomes]
rs74111820	0.91[AFR][1000 genomes]
rs74111821	1.00[AMR][1000 genomes]
rs74111822	0.98[AFR][1000 genomes]
rs74111823	0.91[AFR][1000 genomes]
rs74111825	0.81[AFR][1000 genomes]
rs74111826	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv549862	chr10:4554018-4593307	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1040910	chr10:4554674-4606939	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4567400-4571000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:4568400-4570800	Enhancers	HSMMtube	muscle
3	chr10:4568400-4571200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:4568400-4571600	Enhancers	HSMM	muscle
5	chr10:4568800-4570800	Enhancers	HMEC	breast
6	chr10:4569600-4571000	Enhancers	NHEK	skin
7	chr10:4570000-4571400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:4570000-4571400	Enhancers	NHDF-Ad	bronchial
9	chr10:4570000-4573800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:4570000-4574000	Weak transcription	Fetal Brain Male	brain
11	chr10:4570000-4575800	Weak transcription	Fetal Brain Female	brain
12	chr10:4570200-4573800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:4570200-4574200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:4570200-4574400	Weak transcription	Adipose Nuclei	Adipose
15	chr10:4570200-4574400	Weak transcription	NHLF	lung
16	chr10:4570200-4574600	Weak transcription	NH-A	brain
17	chr10:4570200-4575800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:4570400-4573800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:4570400-4574000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:4570400-4574600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:4570600-4571000	Weak transcription	Osteobl	bone

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