Variant report

Variant	rs7068449
Chromosome Location	chr10:4676281-4676282
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11816349	1.00[AMR][1000 genomes]
rs74111812	1.00[AMR][1000 genomes]
rs74111819	1.00[AMR][1000 genomes]
rs74111821	1.00[AMR][1000 genomes]
rs74111824	1.00[AMR][1000 genomes]
rs74111826	1.00[AMR][1000 genomes]
rs7903328	1.00[AMR][1000 genomes]
rs7920599	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv894791	chr10:4624233-4687532	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4639600-4680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:4675000-4676600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:4675000-4677000	Enhancers	HUVEC	blood vessel
4	chr10:4675600-4679800	Weak transcription	Left Ventricle	heart
5	chr10:4676000-4676400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr10:4676200-4677600	Weak transcription	Ovary	ovary
7	chr10:4676200-4679000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:4676200-4679800	Weak transcription	Placenta	Placenta
9	chr10:4676200-4679800	Weak transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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