Variant report

Variant	rs74111825
Chromosome Location	chr10:4571038-4571039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4569855..4572321-chr10:4573462..4575585,2	K562	blood:
2	chr10:4571025..4573513-chr10:4576423..4579322,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1904668	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56397847	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56970098	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57865065	0.82[AFR][1000 genomes]
rs58545396	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58744892	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59057568	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59480230	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74111814	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74111815	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74111820	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74111822	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74111823	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74111824	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv549862	chr10:4554018-4593307	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1040910	chr10:4554674-4606939	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4568400-4571200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr10:4568400-4571600	Enhancers	HSMM	muscle
3	chr10:4570000-4571400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:4570000-4571400	Enhancers	NHDF-Ad	bronchial
5	chr10:4570000-4573800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:4570000-4574000	Weak transcription	Fetal Brain Male	brain
7	chr10:4570000-4575800	Weak transcription	Fetal Brain Female	brain
8	chr10:4570200-4573800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:4570200-4574200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:4570200-4574400	Weak transcription	Adipose Nuclei	Adipose
11	chr10:4570200-4574400	Weak transcription	NHLF	lung
12	chr10:4570200-4574600	Weak transcription	NH-A	brain
13	chr10:4570200-4575800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:4570400-4573800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:4570400-4574000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:4570400-4574600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:4570800-4574400	Weak transcription	HSMMtube	muscle
18	chr10:4570800-4574600	Weak transcription	HMEC	breast
19	chr10:4571000-4571200	Enhancers	Osteobl	bone
20	chr10:4571000-4573600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:4571000-4574600	Weak transcription	NHEK	skin

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