Variant report

Variant	rs56970098
Chromosome Location	chr10:4570039-4570040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4569855..4572321-chr10:4573462..4575585,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1904668	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56397847	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57865065	0.98[AFR][1000 genomes]
rs58545396	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58744892	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59057568	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59480230	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74111814	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74111815	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74111820	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74111822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74111823	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74111824	0.98[AFR][1000 genomes]
rs74111825	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv522046	chr10:4538492-4570425	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv549862	chr10:4554018-4593307	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1040910	chr10:4554674-4606939	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4567400-4571000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:4568400-4570800	Enhancers	HSMMtube	muscle
3	chr10:4568400-4571200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:4568400-4571600	Enhancers	HSMM	muscle
5	chr10:4568600-4570200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:4568600-4570200	Enhancers	Adipose Nuclei	Adipose
7	chr10:4568800-4570800	Enhancers	HMEC	breast
8	chr10:4569000-4570600	Enhancers	Osteobl	bone
9	chr10:4569400-4570200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:4569400-4570200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:4569400-4570200	Enhancers	Fetal Muscle Leg	muscle
12	chr10:4569600-4570200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:4569600-4570200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:4569600-4570200	Enhancers	NH-A	brain
15	chr10:4569600-4570200	Enhancers	NHLF	lung
16	chr10:4569600-4570400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:4569600-4570400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:4569600-4571000	Enhancers	NHEK	skin
19	chr10:4569800-4570200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:4569800-4570200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:4570000-4570400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:4570000-4571400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:4570000-4571400	Enhancers	NHDF-Ad	bronchial
24	chr10:4570000-4573800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:4570000-4574000	Weak transcription	Fetal Brain Male	brain
26	chr10:4570000-4575800	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links