Variant report

Variant	rs74111823
Chromosome Location	chr10:4569308-4569309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1904668	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56397847	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56970098	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57865065	0.91[AFR][1000 genomes]
rs58545396	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58744892	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59057568	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59480230	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74111814	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74111815	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74111820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74111822	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74111824	0.91[AFR][1000 genomes]
rs74111825	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv522046	chr10:4538492-4570425	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv549862	chr10:4554018-4593307	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1040910	chr10:4554674-4606939	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4562200-4569600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:4567400-4569400	Enhancers	NHDF-Ad	bronchial
3	chr10:4567400-4571000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:4567600-4569600	Weak transcription	Ovary	ovary
5	chr10:4568400-4570000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:4568400-4570800	Enhancers	HSMMtube	muscle
7	chr10:4568400-4571200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr10:4568400-4571600	Enhancers	HSMM	muscle
9	chr10:4568600-4569400	Weak transcription	Fetal Brain Female	brain
10	chr10:4568600-4570000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:4568600-4570200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:4568600-4570200	Enhancers	Adipose Nuclei	Adipose
13	chr10:4568800-4569400	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:4568800-4570000	Enhancers	Fetal Brain Male	brain
15	chr10:4568800-4570800	Enhancers	HMEC	breast
16	chr10:4569000-4569400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:4569000-4570600	Enhancers	Osteobl	bone
18	chr10:4569200-4569600	Weak transcription	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links