Variant report

Variant	rs59154296
Chromosome Location	chr15:40973253-40973254
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12323939	1.00[AMR][1000 genomes]
rs45494798	1.00[AMR][1000 genomes]
rs56979580	1.00[AMR][1000 genomes]
rs58614880	1.00[AMR][1000 genomes]
rs59648663	1.00[AMR][1000 genomes]
rs60223077	1.00[AMR][1000 genomes]
rs73384327	1.00[AMR][1000 genomes]
rs73394730	1.00[AMR][1000 genomes]
rs73394786	1.00[AMR][1000 genomes]
rs73396569	1.00[AMR][1000 genomes]
rs73396577	1.00[AMR][1000 genomes]
rs9652438	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1053173	chr15:40933163-41094127	Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv542363	chr15:40933163-41094127	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	nsv904099	chr15:40949526-41041875	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv529030	chr15:40956471-41012695	Active TSS Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv904100	chr15:40959624-40994706	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40913800-40986000	Weak transcription	A549	lung
2	chr15:40945000-40984200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:40950000-40981200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:40955200-40976600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:40955200-40983200	Weak transcription	Fetal Intestine Small	intestine
6	chr15:40955800-40976000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:40958600-40981000	Weak transcription	Thymus	Thymus
8	chr15:40960400-40977000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:40971200-40973600	Enhancers	Primary B cells from peripheral blood	blood
10	chr15:40971200-40985800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:40971400-40977400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:40971400-40981000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:40971600-40984000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:40971600-40984200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:40971600-40985600	Weak transcription	Dnd41	blood
16	chr15:40971600-40985800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr15:40971800-40982400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:40971800-40983800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr15:40971800-40984000	Weak transcription	Brain Hippocampus Middle	brain
20	chr15:40971800-40984200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr15:40971800-40985800	Weak transcription	Brain Angular Gyrus	brain
22	chr15:40972200-40973400	Enhancers	GM12878-XiMat	blood
23	chr15:40972400-40973400	Enhancers	K562	blood
24	chr15:40972400-40984600	Weak transcription	Placenta	Placenta
25	chr15:40972600-40984200	Weak transcription	Spleen	Spleen
26	chr15:40972800-40984000	Weak transcription	HepG2	liver
27	chr15:40973200-40985600	Weak transcription	Primary B cells from cord blood	blood

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