Variant report

Variant	rs9652438
Chromosome Location	chr15:40785615-40785616
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40763768..40766540-chr15:40784281..40786409,2	K562	blood:
2	chr15:40782898..40785879-chr15:40789263..40792027,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs45494798	1.00[AMR][1000 genomes]
rs56979580	1.00[AMR][1000 genomes]
rs58614880	1.00[AMR][1000 genomes]
rs59154296	1.00[AMR][1000 genomes]
rs59648663	1.00[AMR][1000 genomes]
rs60223077	1.00[AMR][1000 genomes]
rs7173239	1.00[AMR][1000 genomes]
rs73384327	1.00[AMR][1000 genomes]
rs73394730	1.00[AMR][1000 genomes]
rs73394786	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv3443211	chr15:40783910-40786008	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40785000-40785800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:40785000-40786600	Enhancers	Primary T cells fromperipheralblood	blood
3	chr15:40785000-40786600	Enhancers	Dnd41	blood
4	chr15:40785000-40786800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr15:40785200-40785800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:40785200-40785800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:40785200-40785800	Enhancers	K562	blood
8	chr15:40785200-40786000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:40785200-40786000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr15:40785200-40786200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:40785200-40786200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:40785200-40786400	Enhancers	NHEK	skin
13	chr15:40785200-40786600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr15:40785200-40786600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:40785200-40786600	Enhancers	HMEC	breast
16	chr15:40785400-40785800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:40785400-40785800	Enhancers	HSMM	muscle
18	chr15:40785400-40786000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:40785400-40786000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr15:40785400-40786400	Enhancers	Hela-S3	cervix
21	chr15:40785600-40785800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr15:40785600-40786000	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:40785600-40786000	Enhancers	Primary T cells from cord blood	blood
24	chr15:40785600-40786000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
25	chr15:40785600-40786000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:40785600-40786000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:40785600-40786000	Bivalent Enhancer	Osteobl	bone
28	chr15:40785600-40786200	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr15:40785600-40786200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr15:40785600-40786200	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr15:40785600-40786600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr15:40785600-40787200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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