Variant report

Variant	rs59157814
Chromosome Location	chr3:133854107-133854108
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57457165	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60314179	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61598143	0.93[AFR][1000 genomes]
rs6770758	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965344	chr3:133805086-133862489	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133827600-133862800	Weak transcription	Left Ventricle	heart
2	chr3:133840600-133862800	Weak transcription	Right Ventricle	heart
3	chr3:133840800-133862800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:133842000-133872600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:133842600-133862800	Weak transcription	Adipose Nuclei	Adipose
6	chr3:133842600-133870600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:133842800-133872000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:133843000-133858600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:133843000-133871200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:133843000-133872600	Weak transcription	Gastric	stomach
11	chr3:133843200-133858800	Weak transcription	Pancreas	Pancrea
12	chr3:133848200-133862800	Weak transcription	Ovary	ovary
13	chr3:133848400-133858400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:133848400-133858600	Weak transcription	Aorta	Aorta
15	chr3:133848400-133866400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:133848400-133867400	Weak transcription	Primary T cells from cord blood	blood
17	chr3:133848600-133865400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:133848600-133867600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:133848600-133872600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:133850800-133862800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:133852000-133866000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:133852200-133858800	Weak transcription	Esophagus	oesophagus
23	chr3:133853200-133858800	Weak transcription	Fetal Stomach	stomach
24	chr3:133853400-133854400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr3:133853600-133856200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:133853600-133857600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:133853600-133858800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:133853600-133862800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:133853600-133870600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr3:133853600-133871000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:133853800-133867400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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