Variant report

Variant	rs60314179
Chromosome Location	chr3:133823337-133823338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57457165	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59157814	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61598143	0.91[AFR][1000 genomes]
rs6770758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965344	chr3:133805086-133862489	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133821000-133826400	Weak transcription	Right Atrium	heart
2	chr3:133821200-133824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:133821200-133824600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:133821400-133824600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:133822000-133823400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:133823000-133823600	Enhancers	NHDF-Ad	bronchial
7	chr3:133823200-133825400	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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