Variant report

Variant	rs59172728
Chromosome Location	chr7:83689217-83689218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16887610	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17158583	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60359427	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61482260	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73187480	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73189355	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73189358	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888624	chr7:83596683-83698177	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv888626	chr7:83651854-83698177	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv888627	chr7:83659577-83708238	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888628	chr7:83659577-83722691	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83673800-83707600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:83674600-83689600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:83678800-83690400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:83685800-83689600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:83685800-83690200	Weak transcription	NHDF-Ad	bronchial
6	chr7:83685800-83690400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:83685800-83691600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:83685800-83691800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:83686000-83691600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:83687200-83691400	Enhancers	NHEK	skin
11	chr7:83687400-83691000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:83687400-83691200	Enhancers	HMEC	breast
13	chr7:83687600-83690200	Enhancers	HUVEC	blood vessel
14	chr7:83688000-83689800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:83688000-83689800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:83688400-83691400	Enhancers	Hela-S3	cervix
17	chr7:83688600-83689800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:83688600-83690000	Weak transcription	NHLF	lung
19	chr7:83688600-83690200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:83688600-83690200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:83688600-83690200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:83688600-83690200	Enhancers	NH-A	brain
23	chr7:83688800-83689800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:83688800-83689800	Enhancers	A549	lung
25	chr7:83688800-83690000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:83688800-83690000	Weak transcription	HepG2	liver
27	chr7:83688800-83690200	Weak transcription	Osteobl	bone
28	chr7:83688800-83690400	Weak transcription	Fetal Intestine Large	intestine
29	chr7:83689000-83689400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr7:83689000-83689600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr7:83689000-83691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr7:83689200-83691400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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