Variant report

Variant	rs16887610
Chromosome Location	chr7:83691676-83691677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1534075	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs17158521	0.86[ASN][1000 genomes]
rs17158529	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs17158532	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs17158583	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2372020	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs3779441	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs41323648	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs59023591	0.86[ASN][1000 genomes]
rs59172728	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60359427	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61482260	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66493308	0.87[ASN][1000 genomes]
rs68158025	0.83[ASN][1000 genomes]
rs73185447	0.86[ASN][1000 genomes]
rs73185458	0.86[ASN][1000 genomes]
rs73185463	0.86[ASN][1000 genomes]
rs73185469	0.86[ASN][1000 genomes]
rs73185480	0.87[ASN][1000 genomes]
rs73187439	0.87[ASN][1000 genomes]
rs73187440	0.87[ASN][1000 genomes]
rs73187443	0.87[ASN][1000 genomes]
rs73187445	0.93[ASN][1000 genomes]
rs73187447	0.92[ASN][1000 genomes]
rs73187448	0.92[ASN][1000 genomes]
rs73187451	0.93[ASN][1000 genomes]
rs73187453	0.93[ASN][1000 genomes]
rs73187455	0.93[ASN][1000 genomes]
rs73187457	0.93[ASN][1000 genomes]
rs73187458	0.93[ASN][1000 genomes]
rs73187460	0.93[ASN][1000 genomes]
rs73187462	0.93[ASN][1000 genomes]
rs73187464	0.93[ASN][1000 genomes]
rs73187466	0.93[ASN][1000 genomes]
rs73187470	0.93[ASN][1000 genomes]
rs73187479	0.93[ASN][1000 genomes]
rs73187480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73189355	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73189358	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888624	chr7:83596683-83698177	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv888626	chr7:83651854-83698177	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv888627	chr7:83659577-83708238	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888628	chr7:83659577-83722691	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83673800-83707600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:83685800-83691800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:83689000-83691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:83689600-83697800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:83689800-83691800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:83689800-83714400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:83690400-83692000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:83690600-83714600	Weak transcription	NHDF-Ad	bronchial
9	chr7:83690800-83691800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:83690800-83702800	Weak transcription	NHLF	lung
11	chr7:83691400-83703000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:83691600-83691800	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr7:83691600-83692000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr7:83691600-83692000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:83691600-83692000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:83691600-83692200	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr7:83691600-83692200	Active TSS	H9 Cell Line	embryonic stem cell
18	chr7:83691600-83692200	Active TSS	HUES6 Cell Line	embryonic stem cell

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