Variant report

Variant	rs73187462
Chromosome Location	chr7:83677069-83677070
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:83628560..83631062-chr7:83675861..83678781,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1534075	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16887610	0.93[ASN][1000 genomes]
rs17158521	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17158529	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17158532	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17158583	0.89[ASN][1000 genomes]
rs2372020	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3735516	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3779441	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3801604	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41323648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59023591	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60359427	0.89[ASN][1000 genomes]
rs61482260	0.89[ASN][1000 genomes]
rs66493308	0.93[ASN][1000 genomes]
rs67536627	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs68158025	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73181988	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73183709	0.82[EUR][1000 genomes]
rs73185435	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73185447	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73185458	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73185463	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73185469	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73185480	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73187439	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73187440	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73187443	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73187445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73187448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73187451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187480	0.93[ASN][1000 genomes]
rs73189355	0.89[ASN][1000 genomes]
rs73189358	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020784	chr7:83577402-83687108	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv888623	chr7:83596683-83687622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv888624	chr7:83596683-83698177	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888625	chr7:83616528-83687622	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3352967	chr7:83626144-83684599	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv888626	chr7:83651854-83698177	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv888627	chr7:83659577-83708238	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv888628	chr7:83659577-83722691	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83652200-83680200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:83670200-83685000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:83671800-83677600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:83671800-83687400	Weak transcription	Fetal Intestine Large	intestine
5	chr7:83672000-83684600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:83672000-83685800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:83673200-83678200	Weak transcription	Hela-S3	cervix
8	chr7:83673200-83688200	Weak transcription	NHLF	lung
9	chr7:83673800-83678400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:83673800-83687400	Weak transcription	NH-A	brain
11	chr7:83673800-83707600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:83674600-83678400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:83674600-83687600	Weak transcription	Fetal Lung	lung
14	chr7:83674600-83689600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:83674800-83677400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:83675200-83677600	Enhancers	HepG2	liver
17	chr7:83675800-83684600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:83675800-83684600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:83675800-83688400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:83676200-83684600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:83676200-83684800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:83676400-83677400	Enhancers	Stomach Mucosa	stomach
23	chr7:83676800-83677800	Weak transcription	NHDF-Ad	bronchial
24	chr7:83676800-83678000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:83677000-83678400	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links