Variant report

Variant	rs17158529
Chromosome Location	chr7:83659577-83659578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs13437857	1.00[MEX][hapmap]
rs1524884	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs1533996	1.00[ASW][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.86[YRI][hapmap]
rs1534075	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16887610	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs16887642	1.00[MEX][hapmap]
rs17158447	0.86[ASW][hapmap]
rs17158521	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158532	1.00[ASW][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158583	0.88[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.92[TSI][hapmap];0.82[ASN][1000 genomes]
rs17158679	1.00[MEX][hapmap]
rs2372020	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735516	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3779441	0.89[CHB][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801604	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41323648	0.80[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56144277	0.91[AFR][1000 genomes]
rs58214104	0.86[AFR][1000 genomes]
rs59023591	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59227426	0.88[AFR][1000 genomes]
rs60359427	0.82[ASN][1000 genomes]
rs61482260	0.82[ASN][1000 genomes]
rs66493308	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs67536627	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs68158025	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73181988	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73183709	0.95[EUR][1000 genomes]
rs73185435	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73185447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73185458	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73185463	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73185469	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73185480	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73187439	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73187440	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73187443	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73187445	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187447	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73187448	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73187451	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187453	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187455	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187457	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187458	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187460	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187462	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187464	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187466	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187470	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187479	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187480	0.86[ASN][1000 genomes]
rs73189355	0.82[ASN][1000 genomes]
rs73189358	0.82[ASN][1000 genomes]
rs73376843	0.80[AFR][1000 genomes]
rs73376844	0.81[AFR][1000 genomes]
rs73376849	0.83[AFR][1000 genomes]
rs73376867	0.94[AFR][1000 genomes]
rs73376876	0.91[AFR][1000 genomes]
rs73376888	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020784	chr7:83577402-83687108	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv888623	chr7:83596683-83687622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv888624	chr7:83596683-83698177	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888625	chr7:83616528-83687622	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3352967	chr7:83626144-83684599	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv888626	chr7:83651854-83698177	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv888627	chr7:83659577-83708238	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv888628	chr7:83659577-83722691	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83610200-83673000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:83652200-83680200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:83652400-83671400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:83655400-83669800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:83655400-83671400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:83655400-83671600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:83655600-83661400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:83655600-83663000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:83655600-83666400	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:83655600-83669600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:83655600-83671000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:83655600-83671000	Weak transcription	A549	lung
13	chr7:83655600-83673200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:83656000-83667200	Weak transcription	NHDF-Ad	bronchial
15	chr7:83656200-83661200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:83659200-83660000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:83659400-83660200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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