Variant report

Variant	rs1524884
Chromosome Location	chr7:83638342-83638343
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1533996	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs17158521	0.89[AFR][1000 genomes]
rs17158529	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs17158532	0.90[YRI][hapmap]
rs56144277	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57380303	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58214104	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58436795	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59227426	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs67536627	0.94[AFR][1000 genomes]
rs73376843	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73376844	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376849	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376867	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376876	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376888	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709421	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1020784	chr7:83577402-83687108	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv888623	chr7:83596683-83687622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888624	chr7:83596683-83698177	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888625	chr7:83616528-83687622	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3352967	chr7:83626144-83684599	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83589000-83654600	Weak transcription	Fetal Stomach	stomach
2	chr7:83591200-83638400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:83591200-83654600	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:83606000-83654000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:83606200-83643200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:83609800-83650400	Weak transcription	NHLF	lung
7	chr7:83610200-83642200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:83610200-83673000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:83622800-83643200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr7:83624400-83651600	Weak transcription	Fetal Intestine Small	intestine
11	chr7:83625000-83646800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:83625600-83643600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:83626000-83650600	Weak transcription	NH-A	brain
14	chr7:83626400-83638600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:83626800-83638800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:83629400-83643600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:83632600-83642400	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:83632800-83642200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:83634800-83646200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:83634800-83652000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:83634800-83654600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:83635000-83638800	Weak transcription	Fetal Lung	lung
23	chr7:83635000-83654400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:83635200-83640600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr7:83635200-83651400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr7:83635400-83650800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:83636200-83654800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:83636800-83646800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr7:83637000-83640000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:83637800-83638800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:83638000-83638400	Enhancers	A549	lung
32	chr7:83638000-83639600	Enhancers	Muscle Satellite Cultured Cells	--
33	chr7:83638200-83638800	Weak transcription	NHDF-Ad	bronchial
34	chr7:83638200-83639400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:83638200-83639600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links