Variant report

Variant	rs1533996
Chromosome Location	chr7:83636623-83636624
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13437857	1.00[MEX][hapmap]
rs1524884	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs16887642	1.00[MEX][hapmap]
rs17158447	0.86[ASW][hapmap]
rs17158521	0.82[AFR][1000 genomes]
rs17158529	1.00[ASW][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.86[YRI][hapmap]
rs17158532	1.00[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.86[YRI][hapmap]
rs17158679	1.00[MEX][hapmap]
rs17158706	1.00[TSI][hapmap]
rs57380303	0.85[AFR][1000 genomes]
rs58214104	0.87[AFR][1000 genomes]
rs58436795	0.86[AFR][1000 genomes]
rs67536627	0.86[AFR][1000 genomes]
rs73376843	0.89[AFR][1000 genomes]
rs73376844	0.90[AFR][1000 genomes]
rs73376849	0.91[AFR][1000 genomes]
rs73709421	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1020784	chr7:83577402-83687108	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv888623	chr7:83596683-83687622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888624	chr7:83596683-83698177	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888625	chr7:83616528-83687622	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3352967	chr7:83626144-83684599	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83589000-83654600	Weak transcription	Fetal Stomach	stomach
2	chr7:83591200-83638400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:83591200-83654600	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:83606000-83654000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:83606200-83643200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:83609800-83650400	Weak transcription	NHLF	lung
7	chr7:83610200-83642200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:83610200-83673000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:83622800-83643200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr7:83624400-83651600	Weak transcription	Fetal Intestine Small	intestine
11	chr7:83625000-83646800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:83625400-83638200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:83625600-83643600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:83626000-83650600	Weak transcription	NH-A	brain
15	chr7:83626400-83638600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:83626800-83638800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:83629400-83643600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:83632200-83638200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:83632600-83642400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:83632800-83642200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:83633200-83636800	Strong transcription	NHDF-Ad	bronchial
22	chr7:83633600-83637000	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:83633600-83637200	Weak transcription	Fetal Brain Female	brain
24	chr7:83634200-83637600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:83634800-83638200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:83634800-83646200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:83634800-83652000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr7:83634800-83654600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr7:83635000-83638800	Weak transcription	Fetal Lung	lung
30	chr7:83635000-83654400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:83635200-83640600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr7:83635200-83651400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr7:83635400-83650800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:83635800-83636800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr7:83636200-83654800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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