Variant report

Variant	rs3779441
Chromosome Location	chr7:83643242-83643243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:83628708..83631589-chr7:83641659..83643876,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1534075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887610	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs17158521	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17158529	0.89[CHB][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17158532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17158583	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs2372020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3735516	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3801604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41323648	0.82[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59023591	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66493308	0.90[ASN][1000 genomes]
rs67536627	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68158025	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73181988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73183709	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73185435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73185447	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73185458	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73185463	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73185469	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73185480	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73187439	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73187440	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73187443	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73187445	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73187447	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73187448	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73187451	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73187453	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73187455	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73187457	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73187458	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73187460	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73187462	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73187464	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73187466	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73187470	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73187479	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73187480	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1020784	chr7:83577402-83687108	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv888623	chr7:83596683-83687622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888624	chr7:83596683-83698177	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888625	chr7:83616528-83687622	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3352967	chr7:83626144-83684599	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83589000-83654600	Weak transcription	Fetal Stomach	stomach
2	chr7:83591200-83654600	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:83606000-83654000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:83609800-83650400	Weak transcription	NHLF	lung
5	chr7:83610200-83673000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:83624400-83651600	Weak transcription	Fetal Intestine Small	intestine
7	chr7:83625000-83646800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:83625600-83643600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:83626000-83650600	Weak transcription	NH-A	brain
10	chr7:83629400-83643600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:83634800-83646200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:83634800-83652000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:83634800-83654600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:83635000-83654400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:83635200-83651400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr7:83635400-83650800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:83636200-83654800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:83636800-83646800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:83638600-83652000	Weak transcription	Colon Smooth Muscle	Colon
20	chr7:83639200-83650600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:83640000-83647000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:83641000-83650600	Weak transcription	NHDF-Ad	bronchial
23	chr7:83642000-83651600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:83642400-83646600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:83642400-83652000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr7:83642800-83643600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:83643200-83643600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr7:83643200-83643600	Enhancers	A549	lung

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