Variant report

Variant	rs59197805
Chromosome Location	chr12:63665166-63665167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr12:63665077-63665238	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
HNRNPA1P69	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1143806	1.00[EUR][1000 genomes]
rs1146104	1.00[EUR][1000 genomes]
rs1251773	1.00[EUR][1000 genomes]
rs2228155	1.00[EUR][1000 genomes]
rs511794	1.00[EUR][1000 genomes]
rs513532	1.00[EUR][1000 genomes]
rs531530	1.00[EUR][1000 genomes]
rs557955	1.00[EUR][1000 genomes]
rs56273638	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59727783	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60555289	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60790785	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs699625	1.00[EUR][1000 genomes]
rs7304068	1.00[EUR][1000 genomes]
rs7315184	1.00[EUR][1000 genomes]
rs74097303	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097306	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097307	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097309	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097311	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097312	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097313	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097315	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097316	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097317	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100818	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100819	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100820	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100821	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100822	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100823	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv469592	chr12:63486510-63679139	Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv482578	chr12:63486510-63679139	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1035736	chr12:63526274-63920372	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv541510	chr12:63526274-63920372	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1052866	chr12:63562442-63879794	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv541511	chr12:63562442-63879794	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv832438	chr12:63571652-63745827	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv1813482	chr12:63575665-63670627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv983338	chr12:63665069-63666755	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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