Variant report

Variant	rs60790785
Chromosome Location	chr12:63655692-63655693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM5-5	chr12:63654629-63657550	l_664_chr12:63563604-63657550_brain

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1143806	1.00[EUR][1000 genomes]
rs1146104	1.00[EUR][1000 genomes]
rs1251773	1.00[EUR][1000 genomes]
rs2228155	1.00[EUR][1000 genomes]
rs511794	1.00[EUR][1000 genomes]
rs513532	1.00[EUR][1000 genomes]
rs531530	1.00[EUR][1000 genomes]
rs557955	1.00[EUR][1000 genomes]
rs56273638	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59197805	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59727783	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60555289	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs699625	1.00[EUR][1000 genomes]
rs7304068	1.00[EUR][1000 genomes]
rs7315184	1.00[EUR][1000 genomes]
rs74097303	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097306	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097307	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097309	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097311	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097312	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097313	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097315	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097316	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097317	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100818	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100819	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100820	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100821	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100822	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100823	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7960001	1.00[EUR][1000 genomes]
rs7961102	1.00[EUR][1000 genomes]
rs7969071	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv469592	chr12:63486510-63679139	Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv482578	chr12:63486510-63679139	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv832436	chr12:63503993-63658112	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1035736	chr12:63526274-63920372	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv541510	chr12:63526274-63920372	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1052866	chr12:63562442-63879794	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv541511	chr12:63562442-63879794	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv832438	chr12:63571652-63745827	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv1813482	chr12:63575665-63670627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63655200-63656200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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