Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12099667	1.00[EUR][1000 genomes]
rs12308434	1.00[EUR][1000 genomes]
rs2228155	1.00[EUR][1000 genomes]
rs59727783	1.00[EUR][1000 genomes]
rs60555289	1.00[EUR][1000 genomes]
rs60790785	1.00[EUR][1000 genomes]
rs699594	1.00[EUR][1000 genomes]
rs7315184	1.00[EUR][1000 genomes]
rs74097303	1.00[EUR][1000 genomes]
rs74097306	1.00[EUR][1000 genomes]
rs74097307	1.00[EUR][1000 genomes]
rs74097309	1.00[EUR][1000 genomes]
rs74097311	1.00[EUR][1000 genomes]
rs74097312	1.00[EUR][1000 genomes]
rs74097313	1.00[EUR][1000 genomes]
rs74097315	1.00[EUR][1000 genomes]
rs74100818	1.00[EUR][1000 genomes]
rs74100819	1.00[EUR][1000 genomes]
rs74100820	1.00[EUR][1000 genomes]
rs74100821	1.00[EUR][1000 genomes]
rs74100822	1.00[EUR][1000 genomes]
rs74100823	1.00[EUR][1000 genomes]
rs7960001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7969071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2751108	chr12:63445933-63503952	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63470200-63478200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:63470800-63477600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:63472800-63480400	Enhancers	Fetal Intestine Small	intestine
4	chr12:63473200-63478400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:63473400-63474800	Enhancers	Fetal Kidney	kidney
6	chr12:63473400-63475200	Enhancers	Stomach Mucosa	stomach
7	chr12:63473400-63480600	Enhancers	Fetal Intestine Large	intestine
8	chr12:63474000-63479200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:63474200-63485800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr12:63474400-63477200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr12:63474400-63477600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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