Variant report

Variant	rs59234905
Chromosome Location	chr4:158935411-158935412
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:158934945..158937629-chr4:158953752..158956012,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11936729	1.00[AMR][1000 genomes]
rs11944517	1.00[AMR][1000 genomes]
rs11945640	1.00[AMR][1000 genomes]
rs11946222	1.00[AMR][1000 genomes]
rs55788430	1.00[AMR][1000 genomes]
rs56033321	1.00[AMR][1000 genomes]
rs56167625	1.00[AMR][1000 genomes]
rs56754638	1.00[AMR][1000 genomes]
rs57754015	1.00[AMR][1000 genomes]
rs58547264	1.00[AMR][1000 genomes]
rs58624740	1.00[AMR][1000 genomes]
rs72967842	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72971730	1.00[AMR][1000 genomes]
rs73857535	1.00[AMR][1000 genomes]
rs73857540	1.00[AMR][1000 genomes]
rs73857549	1.00[AMR][1000 genomes]
rs73857576	1.00[AMR][1000 genomes]
rs73857581	1.00[AMR][1000 genomes]
rs73857583	1.00[AMR][1000 genomes]
rs73857587	1.00[AMR][1000 genomes]
rs73857590	1.00[AMR][1000 genomes]
rs73857591	1.00[AMR][1000 genomes]
rs73857593	1.00[AMR][1000 genomes]
rs73857598	1.00[AMR][1000 genomes]
rs7655528	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv881288	chr4:158891733-159028080	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158923800-158939400	Weak transcription	HepG2	liver
2	chr4:158926000-158938800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:158928400-158936200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:158930200-158937400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:158930200-158940800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:158930400-158936000	Weak transcription	HSMMtube	muscle
7	chr4:158930400-158940800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:158930600-158937600	Weak transcription	Brain Substantia Nigra	brain
9	chr4:158930600-158940800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:158930800-158941400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:158932600-158941400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:158933000-158936400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:158933000-158936400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:158933000-158936400	Weak transcription	Ovary	ovary
15	chr4:158933000-158938600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr4:158933000-158938800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:158933200-158936400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:158934200-158941400	Enhancers	HUVEC	blood vessel
19	chr4:158934400-158936400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:158934400-158937400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:158934400-158938200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:158934600-158935600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:158934600-158935600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:158934600-158935600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:158934600-158938200	Enhancers	HSMM	muscle
26	chr4:158934600-158943800	Enhancers	NHDF-Ad	bronchial
27	chr4:158934800-158935800	Weak transcription	Osteobl	bone
28	chr4:158934800-158936200	Weak transcription	NH-A	brain
29	chr4:158934800-158936200	Weak transcription	NHEK	skin
30	chr4:158934800-158939200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr4:158935000-158936400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:158935400-158935600	Enhancers	Brain Anterior Caudate	brain
33	chr4:158935400-158935800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:158935400-158935800	Weak transcription	HMEC	breast

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