Variant report

Variant	rs72967842
Chromosome Location	chr4:158934318-158934319
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:158933316..158935337-chr4:159068376..159070456,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11936729	1.00[AMR][1000 genomes]
rs11944517	1.00[AMR][1000 genomes]
rs11945640	1.00[AMR][1000 genomes]
rs11946222	1.00[AMR][1000 genomes]
rs55788430	1.00[AMR][1000 genomes]
rs56033321	1.00[AMR][1000 genomes]
rs56167625	1.00[AMR][1000 genomes]
rs56754638	1.00[AMR][1000 genomes]
rs57754015	1.00[AMR][1000 genomes]
rs58547264	1.00[AMR][1000 genomes]
rs58624740	1.00[AMR][1000 genomes]
rs59234905	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72971730	1.00[AMR][1000 genomes]
rs73857535	1.00[AMR][1000 genomes]
rs73857540	1.00[AMR][1000 genomes]
rs73857549	1.00[AMR][1000 genomes]
rs73857576	1.00[AMR][1000 genomes]
rs73857581	1.00[AMR][1000 genomes]
rs73857583	1.00[AMR][1000 genomes]
rs73857587	1.00[AMR][1000 genomes]
rs73857590	1.00[AMR][1000 genomes]
rs73857591	1.00[AMR][1000 genomes]
rs73857593	1.00[AMR][1000 genomes]
rs73857598	1.00[AMR][1000 genomes]
rs7655528	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv881288	chr4:158891733-159028080	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158923800-158939400	Weak transcription	HepG2	liver
2	chr4:158926000-158938800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:158928400-158936200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:158930200-158934600	Weak transcription	HSMM	muscle
5	chr4:158930200-158934600	Weak transcription	Osteobl	bone
6	chr4:158930200-158937400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:158930200-158940800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:158930400-158934400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:158930400-158934400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:158930400-158934600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:158930400-158935400	Weak transcription	Brain Anterior Caudate	brain
12	chr4:158930400-158936000	Weak transcription	HSMMtube	muscle
13	chr4:158930400-158940800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:158930600-158934400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:158930600-158937600	Weak transcription	Brain Substantia Nigra	brain
16	chr4:158930600-158940800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:158930800-158941400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:158931000-158934600	Weak transcription	HMEC	breast
19	chr4:158931800-158934600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:158932200-158934400	Weak transcription	NH-A	brain
21	chr4:158932600-158941400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:158933000-158934800	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr4:158933000-158936400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:158933000-158936400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:158933000-158936400	Weak transcription	Ovary	ovary
26	chr4:158933000-158938600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr4:158933000-158938800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:158933200-158936400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:158933600-158934400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:158933800-158934600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:158934200-158941400	Enhancers	HUVEC	blood vessel

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