Variant report

Variant	rs59244133
Chromosome Location	chr1:47559889-47559890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11211420	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11211424	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11211425	0.91[ASN][1000 genomes]
rs11211426	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11582907	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11584372	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11584400	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11588382	0.81[AMR][1000 genomes]
rs11589237	0.84[AMR][1000 genomes]
rs12041262	0.82[ASN][1000 genomes]
rs12402481	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12406683	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12408055	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12408938	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12564103	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1502909	0.82[ASN][1000 genomes]
rs17102972	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17102977	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17102978	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1986925	0.83[ASN][1000 genomes]
rs2202221	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2202222	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2221324	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2236332	0.84[AMR][1000 genomes]
rs2292059	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2292060	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2897114	0.83[ASN][1000 genomes]
rs3920100	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4531326	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55694114	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61165610	0.83[AMR][1000 genomes]
rs6668901	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66753730	0.80[ASN][1000 genomes]
rs74073884	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs74073885	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs74074332	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7549836	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9699826	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9699991	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9700422	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9701888	0.83[ASN][1000 genomes]
rs9793989	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763300	chr1:47358532-47628774	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916813	chr1:47435635-47666179	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv870705	chr1:47533705-47620126	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871010	chr1:47533705-47637999	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv870899	chr1:47548974-47637999	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47557800-47573800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links