Variant report

Variant	rs59248595
Chromosome Location	chr9:85894178-85894179
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf103-2	chr9:85894072-85894414	ENSG00000237529.1

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10867970	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12115310	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58814988	0.83[EUR][1000 genomes]
rs59739378	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59812470	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60619200	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61583492	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7027526	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7046038	0.83[EUR][1000 genomes]
rs7048714	0.83[EUR][1000 genomes]
rs73479725	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73479743	0.85[ASN][1000 genomes]
rs73479746	0.85[ASN][1000 genomes]
rs73479763	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73479781	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73479792	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73648519	1.00[EUR][1000 genomes]
rs9942866	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9942867	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:85866200-85913000	Weak transcription	Aorta	Aorta
3	chr9:85882000-85895800	Weak transcription	Fetal Kidney	kidney
4	chr9:85882000-85895800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:85882200-85895800	Weak transcription	Gastric	stomach
6	chr9:85882200-85895800	Weak transcription	Ovary	ovary
7	chr9:85882200-85896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:85883200-85895000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:85884200-85912400	Weak transcription	HepG2	liver
10	chr9:85885200-85896600	Weak transcription	Brain Angular Gyrus	brain
11	chr9:85885400-85896200	Weak transcription	Spleen	Spleen
12	chr9:85885400-85896400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:85885600-85895200	Weak transcription	Psoas Muscle	Psoas
14	chr9:85887200-85895600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:85887200-85895800	Weak transcription	Fetal Heart	heart
16	chr9:85887200-85895800	Weak transcription	Right Ventricle	heart
17	chr9:85888600-85896200	Weak transcription	Fetal Brain Male	brain
18	chr9:85890000-85895800	Weak transcription	Adipose Nuclei	Adipose
19	chr9:85890200-85896200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:85890200-85896200	Weak transcription	Fetal Stomach	stomach
21	chr9:85890400-85896400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:85890400-85902400	Weak transcription	Left Ventricle	heart
23	chr9:85890600-85895200	Weak transcription	Pancreas	Pancrea
24	chr9:85891600-85895800	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr9:85892600-85899600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:85893600-85895200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:85893800-85895200	Weak transcription	Esophagus	oesophagus
28	chr9:85893800-85895200	Weak transcription	NHEK	skin
29	chr9:85894000-85895200	Weak transcription	HMEC	breast
30	chr9:85894000-85896200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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