Variant report
| Variant | rs59249997 |
|---|---|
| Chromosome Location | chr3:159754475-159754476 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RP11-432B6.3.1-3 | chr3:159754345-159754524 | ucscGeneNc_uc003fbw_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs12486839 | 0.83[EUR][1000 genomes] |
| rs12487209 | 0.83[EUR][1000 genomes] |
| rs12487614 | 0.86[EUR][1000 genomes] |
| rs12488038 | 0.83[EUR][1000 genomes] |
| rs12489264 | 1.00[EUR][1000 genomes] |
| rs12492679 | 0.86[EUR][1000 genomes] |
| rs12492730 | 0.83[EUR][1000 genomes] |
| rs12496176 | 0.83[EUR][1000 genomes] |
| rs16830996 | 0.83[EUR][1000 genomes] |
| rs16831029 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2115174 | 0.86[EUR][1000 genomes] |
| rs34842858 | 0.86[EUR][1000 genomes] |
| rs35321606 | 0.86[EUR][1000 genomes] |
| rs59972445 | 0.83[EUR][1000 genomes] |
| rs6771983 | 0.86[EUR][1000 genomes] |
| rs6784758 | 0.86[EUR][1000 genomes] |
| rs7427801 | 0.86[EUR][1000 genomes] |
| rs7427807 | 0.86[EUR][1000 genomes] |
| rs7429852 | 0.86[EUR][1000 genomes] |
| rs7625648 | 0.86[EUR][1000 genomes] |
| rs9283612 | 0.86[EUR][1000 genomes] |
| rs9290052 | 0.86[EUR][1000 genomes] |
| rs9290053 | 0.86[EUR][1000 genomes] |
| rs9812698 | 0.83[EUR][1000 genomes] |
| rs9812995 | 0.83[EUR][1000 genomes] |
| rs9813028 | 0.83[EUR][1000 genomes] |
| rs9816860 | 1.00[EUR][1000 genomes] |
| rs9827531 | 0.86[EUR][1000 genomes] |
| rs9830969 | 0.83[EUR][1000 genomes] |
| rs9834418 | 1.00[EUR][1000 genomes] |
| rs9835467 | 0.83[EUR][1000 genomes] |
| rs9838248 | 0.86[EUR][1000 genomes] |
| rs9850910 | 0.83[EUR][1000 genomes] |
| rs9851355 | 0.83[EUR][1000 genomes] |
| rs9857045 | 0.83[EUR][1000 genomes] |
| rs9862350 | 0.83[EUR][1000 genomes] |
| rs9871440 | 1.00[EUR][1000 genomes] |
| rs9872678 | 0.83[EUR][1000 genomes] |
| rs9873090 | 0.83[EUR][1000 genomes] |
| rs9883287 | 0.83[EUR][1000 genomes] |
| rs9968092 | 0.86[EUR][1000 genomes] |
| rs9968093 | 0.86[EUR][1000 genomes] |
| rs9968097 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829769 | chr3:159606913-159805282 | Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:159744000-159756200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr3:159747000-159756600 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
| 3 | chr3:159753800-159755200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 4 | chr3:159754400-159755800 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
