Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10054474	0.83[EUR][1000 genomes]
rs10056119	0.87[EUR][1000 genomes]
rs10057897	0.83[EUR][1000 genomes]
rs11743713	0.83[EUR][1000 genomes]
rs12716200	0.83[EUR][1000 genomes]
rs16880072	0.99[EUR][1000 genomes]
rs16880081	0.99[EUR][1000 genomes]
rs16880084	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16880088	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16880115	0.87[EUR][1000 genomes]
rs16880117	0.87[EUR][1000 genomes]
rs16880134	0.87[EUR][1000 genomes]
rs2087288	0.81[EUR][1000 genomes]
rs2087290	0.87[EUR][1000 genomes]
rs3843472	0.93[EUR][1000 genomes]
rs4323202	0.87[EUR][1000 genomes]
rs4435843	0.87[EUR][1000 genomes]
rs4526079	0.83[EUR][1000 genomes]
rs4537027	0.83[EUR][1000 genomes]
rs4702539	0.81[EUR][1000 genomes]
rs4702540	0.83[EUR][1000 genomes]
rs4702541	0.83[EUR][1000 genomes]
rs4702542	0.83[EUR][1000 genomes]
rs60049738	0.87[EUR][1000 genomes]
rs62357123	0.87[EUR][1000 genomes]
rs73033659	0.87[EUR][1000 genomes]
rs7356552	0.94[EUR][1000 genomes]
rs7728818	0.83[EUR][1000 genomes]
rs7735934	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024542	chr5:8138412-8299908	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv880948	chr5:8155254-8228409	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv880325	chr5:8155254-8231744	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8210400-8213400	Weak transcription	Brain Anterior Caudate	brain
2	chr5:8212600-8214000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:8213200-8213400	Enhancers	Brain Hippocampus Middle	brain
4	chr5:8213200-8213400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr5:8213200-8214600	Enhancers	Brain Cingulate Gyrus	brain

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