Variant report

Variant	rs59256724
Chromosome Location	chr1:171609415-171609416
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10913680	1.00[EUR][1000 genomes]
rs12090298	1.00[EUR][1000 genomes]
rs16864466	1.00[EUR][1000 genomes]
rs55703533	1.00[EUR][1000 genomes]
rs55835861	1.00[EUR][1000 genomes]
rs58479321	1.00[EUR][1000 genomes]
rs58982503	1.00[EUR][1000 genomes]
rs59060176	1.00[EUR][1000 genomes]
rs59351676	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60443600	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60495803	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60897561	1.00[EUR][1000 genomes]
rs61013259	1.00[EUR][1000 genomes]
rs61296253	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61328888	1.00[EUR][1000 genomes]
rs61359014	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6688701	1.00[EUR][1000 genomes]
rs6698195	1.00[EUR][1000 genomes]
rs6703372	1.00[EUR][1000 genomes]
rs73038304	1.00[EUR][1000 genomes]
rs73038313	1.00[EUR][1000 genomes]
rs73041915	1.00[EUR][1000 genomes]
rs73041916	1.00[EUR][1000 genomes]
rs73041963	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73041964	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73044063	1.00[EUR][1000 genomes]
rs9970108	1.00[EUR][1000 genomes]
rs9970212	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv12447	chr1:171556291-171726822	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv999578	chr1:171578076-171610740	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv528322	chr1:171578532-171612267	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv548191	chr1:171578532-171612267	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171605600-171610800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:171605800-171610400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:171605800-171614400	Weak transcription	Aorta	Aorta
4	chr1:171607800-171610000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:171607800-171610400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:171607800-171612400	Weak transcription	Adipose Nuclei	Adipose
7	chr1:171607800-171614000	Weak transcription	HepG2	liver
8	chr1:171608600-171609800	Enhancers	Placenta	Placenta
9	chr1:171609200-171609600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:171609400-171609600	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr1:171609400-171610800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:171609400-171611200	Enhancers	H9 Cell Line	embryonic stem cell

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