Variant report

Variant	rs73038313
Chromosome Location	chr1:171405717-171405718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:171405355..171408089-chr1:171454758..171456497,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16864447	1.00[EUR][1000 genomes]
rs16864466	1.00[EUR][1000 genomes]
rs56749748	1.00[EUR][1000 genomes]
rs58479321	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58982503	1.00[EUR][1000 genomes]
rs59256724	1.00[EUR][1000 genomes]
rs59719494	1.00[EUR][1000 genomes]
rs61013259	1.00[EUR][1000 genomes]
rs73036313	1.00[EUR][1000 genomes]
rs73036315	1.00[EUR][1000 genomes]
rs73036317	1.00[EUR][1000 genomes]
rs73036319	1.00[EUR][1000 genomes]
rs73036325	1.00[EUR][1000 genomes]
rs73036327	1.00[EUR][1000 genomes]
rs73036333	1.00[EUR][1000 genomes]
rs73036360	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73038304	1.00[EUR][1000 genomes]
rs73041915	1.00[EUR][1000 genomes]
rs73041916	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv10193	chr1:171128845-171414611	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv470745	chr1:171381746-171409514	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv465628	chr1:171381746-171409515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv548189	chr1:171381746-171409515	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171398800-171408400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:171401200-171407600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:171404400-171407600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:171404600-171407200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:171404600-171407200	Weak transcription	HSMM	muscle
6	chr1:171404600-171407400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:171404600-171407400	Weak transcription	A549	lung
8	chr1:171404800-171407200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:171404800-171407400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:171404800-171407400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:171404800-171407400	Weak transcription	NH-A	brain
12	chr1:171404800-171407400	Weak transcription	Osteobl	bone
13	chr1:171404800-171407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:171404800-171410600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:171405000-171407400	Weak transcription	HUVEC	blood vessel
16	chr1:171405200-171407000	Weak transcription	NHEK	skin
17	chr1:171405200-171407200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:171405200-171407200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:171405200-171407200	Weak transcription	Hela-S3	cervix
20	chr1:171405200-171407200	Weak transcription	HMEC	breast
21	chr1:171405200-171407400	Weak transcription	NHDF-Ad	bronchial
22	chr1:171405400-171405800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:171405600-171407200	Weak transcription	NHLF	lung

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